number,state,title,milestone,due,assigned,created,updated,project,tags 13,resolved,handle features without strand information better,None,Not scheduled,Mitch,2009-03-20 09:00:59 -0700,2015-03-02 18:26:05 -0800,JBrowse,feature strand 86,new,Right way to remove a reference sequence?,None,Not scheduled,Mitch,2012-12-07 10:30:04 -0800,2012-12-07 10:30:08 -0800,JBrowse 66,resolved,Documentation of FeatureTrack JSON format,None,Not scheduled,Ian Holmes,2010-09-27 10:52:00 -0700,2012-11-02 13:24:16 -0700,JBrowse 4,resolved,lazy load features,None,Not scheduled,Mitch,2009-01-19 22:06:02 -0800,2012-09-13 08:03:41 -0700,JBrowse,feature lazyload 67,resolved,config file: limit features by source; set feature label,None,Not scheduled,Mitch,2010-09-28 05:44:07 -0700,2012-08-17 13:47:18 -0700,JBrowse 60,resolved,gridline spacing should be controllable from client (or they can be hidden),None,Not scheduled,Mitch,2010-04-29 12:31:03 -0700,2012-06-04 14:18:42 -0700,JBrowse,ui 3,resolved,generate chunked sequence,alpha 0.5,2009-01-23 00:00:00 -0800,Mitch,2009-01-19 21:59:13 -0800,2012-06-04 14:18:38 -0700,JBrowse,sequence track 62,resolved,support the bioperl multiple-location mechanism,None,Not scheduled,Mitch,2010-08-18 06:57:01 -0700,2012-05-30 09:46:51 -0700,JBrowse,"""bioperl gff""" 24,resolved,End user documentation,None,Not scheduled,Mitch,2009-06-09 16:30:14 -0700,2012-04-02 08:52:43 -0700,JBrowse,documentation ui 30,resolved,Screencast,None,Not scheduled,Mitch,2009-07-15 13:22:34 -0700,2012-03-31 19:17:36 -0700,JBrowse 84,resolved,Different colors for track LABELS,None,Not scheduled,None,2012-01-09 14:25:15 -0800,2012-03-28 21:40:01 -0700,JBrowse 58,resolved,feature density/histogram should not be bigger than visible display,None,Not scheduled,Mitch,2010-04-29 11:53:03 -0700,2012-03-28 12:08:26 -0700,JBrowse,feature track ui 41,resolved,UI to set y-axis scale,None,Not scheduled,Mitch,2009-08-14 15:15:47 -0700,2012-03-26 20:17:41 -0700,JBrowse,axis ui wiggle 37,resolved,"""virtual tracks"" as a mechanism for initiating analyses",None,Not scheduled,Mitch,2009-07-24 12:12:43 -0700,2012-03-26 18:34:09 -0700,JBrowse 75,resolved,Error in JsonGenerator.pm: division by zero,None,Not scheduled,JBrowse,2011-02-23 08:47:59 -0800,2012-03-22 13:36:20 -0700,JBrowse 42,resolved,Dragging Zoom,None,Not scheduled,JBrowse,2009-09-01 01:25:39 -0700,2012-03-21 21:34:44 -0700,JBrowse,dragging feature zoom 20,resolved,Allow users to set feature density thresholds,None,Not scheduled,Mitch,2009-06-09 15:21:12 -0700,2012-03-08 12:59:42 -0800,JBrowse,feature ui 74,resolved,Problem with dataRoot property in mixed environments (tomcat/apache),None,Not scheduled,None,2011-02-16 08:15:42 -0800,2012-03-02 11:34:14 -0800,JBrowse 73,resolved,LoadHelper.pm DESTROY error,None,Not scheduled,None,2010-12-13 01:15:00 -0800,2012-02-29 14:56:19 -0800,JBrowse 85,new,"bam_to_json.pl show alignments as alignments, not single spans",None,Not scheduled,JBrowse,2012-01-30 14:06:18 -0800,2012-01-30 14:06:18 -0800,JBrowse 83,new,Make browser usable for large next-generation assemblies.,None,Not scheduled,None,2011-11-11 17:28:22 -0800,2011-11-11 17:28:23 -0800,JBrowse 51,new,Circular Genome Support ,None,Not scheduled,Mitch,2009-12-07 20:31:11 -0800,2011-09-22 14:15:18 -0700,JBrowse,circular genome 82,new,DNA track not shown when zoomed using location text box,None,Not scheduled,None,2011-07-06 10:35:43 -0700,2011-07-06 10:35:44 -0700,JBrowse 81,new,page reload on empty display area causes default track to display,None,Not scheduled,None,2011-06-10 10:21:53 -0700,2011-06-21 11:02:45 -0700,JBrowse 80,new,Allow user to specify label/mouseover,None,Not scheduled,None,2011-05-04 08:30:07 -0700,2011-05-04 08:30:10 -0700,JBrowse 79,new,"When zooming at sequence level, navigating to another chromosome fetches all the files from the current one",None,Not scheduled,None,2011-03-29 06:17:11 -0700,2011-03-29 06:17:41 -0700,JBrowse 77,new,Missed optimization gcc option in wig2png makefile,None,Not scheduled,None,2011-02-28 15:13:10 -0800,2011-03-15 11:37:36 -0700,JBrowse 76,new,wig-to-json.pl generates blank tiles,None,Not scheduled,JBrowse,2011-02-28 15:09:02 -0800,2011-03-14 13:23:29 -0700,JBrowse 78,new,Error in flatfile-to-json with bed file,None,Not scheduled,JBrowse,2011-03-14 13:18:59 -0700,2011-03-14 13:19:00 -0700,JBrowse 72,new,Convert to gff,None,Not scheduled,None,2010-12-02 08:27:33 -0800,2010-12-02 08:29:54 -0800,JBrowse 71,new,FeatureRequest: TextBox instead of Chromosome PullDown,None,Not scheduled,None,2010-10-29 13:47:03 -0700,2010-10-29 13:47:04 -0700,JBrowse 64,resolved,jbrowse.org demo is down,None,Not scheduled,Mitch,2010-09-23 10:20:17 -0700,2010-10-15 15:58:31 -0700,JBrowse 70,new,include reverse complement in DNA track,None,Not scheduled,Mitch,2010-10-13 12:15:41 -0700,2010-10-13 12:15:57 -0700,JBrowse 69,new,allow users to specify the list of refs to prepare-refseqs.pl in a file,None,Not scheduled,Mitch,2010-10-13 11:54:38 -0700,2010-10-13 11:54:38 -0700,JBrowse 19,resolved,handle wiggle regions that span tile boundaries,None,Not scheduled,Ian Holmes,2009-05-28 18:44:36 -0700,2010-10-11 16:37:25 -0700,JBrowse,wiggle 31,open,write an adaptor allowing Bio::Graphics to produce image tracks,None,Not scheduled,Ian Holmes,2009-07-15 13:29:12 -0700,2010-10-03 16:46:18 -0700,JBrowse,image track 18,resolved,move stripe-management logic out of GenomeView,None,Not scheduled,Mitch,2009-04-03 00:30:03 -0700,2010-10-03 14:11:43 -0700,JBrowse,block track ui 12,new,deal with percentage inaccuracy,None,Not scheduled,Mitch,2009-03-19 02:42:34 -0700,2010-10-03 13:16:54 -0700,JBrowse,percentage rendering 9,resolved,showVisibleBlocks doesn't always show all visible blocks,None,Not scheduled,Mitch,2009-01-21 16:53:49 -0800,2010-10-03 13:13:09 -0700,JBrowse 68,new,displayed range can be a bit off at the lowest zoom level for certain scaffold sizes,None,Not scheduled,Mitch,2010-09-29 15:21:17 -0700,2010-09-29 15:21:20 -0700,JBrowse,"""display rounding""" 27,new,Documentation of ImageTrack JSON format,None,Not scheduled,Ian Holmes,2009-07-07 11:32:18 -0700,2010-09-28 05:45:52 -0700,JBrowse,documentation json 65,resolved,div elements and embedding,None,Not scheduled,Mitch,2010-09-26 11:33:21 -0700,2010-09-26 16:52:12 -0700,JBrowse,embed 63,new,configure script does not check libpng version,None,Not scheduled,Ian Holmes,2010-09-16 16:52:14 -0700,2010-09-16 16:52:15 -0700,JBrowse 61,new,Feature requests regarding graphs,None,Not scheduled,JBrowse,2010-07-24 03:30:30 -0700,2010-07-24 03:30:35 -0700,JBrowse 34,new,y-axis for quantitative tracks and histogram views,None,Not scheduled,Mitch,2009-07-18 14:13:12 -0700,2010-04-29 12:32:43 -0700,JBrowse,ui wiggle 44,new,vertical ruler,None,Not scheduled,Mitch,2009-09-10 08:56:55 -0700,2010-04-29 12:27:37 -0700,JBrowse,location ui 57,new,client-side GUI/functionality for track display configuration,None,Not scheduled,Mitch,2010-04-29 11:40:02 -0700,2010-04-29 12:18:54 -0700,JBrowse,feature track ui 43,new,show scale bar or number to indicate the number of bases in the visible region,None,Not scheduled,Mitch,2009-09-08 15:58:28 -0700,2010-04-29 12:16:32 -0700,JBrowse,scale ui 46,new,Generated histogram height scaling,None,Not scheduled,Mitch,2009-09-25 07:57:51 -0700,2010-04-29 12:12:48 -0700,JBrowse,scale track zoom 59,new,click and drag to select a zoom region,None,Not scheduled,Mitch,2010-04-29 12:03:57 -0700,2010-04-29 12:11:35 -0700,JBrowse,ui 14,new,multiple states in cookies,None,Not scheduled,Mitch,2009-03-24 17:34:25 -0700,2010-04-29 11:24:51 -0700,JBrowse,cookie state 54,new,Arrowheads are outside feature boundaries,None,Not scheduled,Mitch,2010-03-17 14:11:30 -0700,2010-03-22 09:12:41 -0700,JBrowse 55,resolved,Rewrite the JsonGenerator findDepth and deepestPath functions to be iterative rather than recursive,None,Not scheduled,Ian Holmes,2010-03-19 18:30:01 -0700,2010-03-20 13:09:33 -0700,JBrowse 53,new,script to remove tracks,None,Not scheduled,Ian Holmes,2010-03-17 08:53:16 -0700,2010-03-17 08:53:19 -0700,JBrowse 52,new,missing libraries Bio::DB::GFF and SeqFeature,None,Not scheduled,JBrowse,2010-03-10 05:26:42 -0800,2010-03-10 05:26:42 -0800,JBrowse,bio gff json library 50,new,Generate heat map in JBrowse,None,Not scheduled,Mitch,2009-11-13 02:15:42 -0800,2009-11-23 00:34:19 -0800,JBrowse 49,new,Make the track activation mechanic more learnable,None,Not scheduled,Mitch,2009-10-01 11:46:27 -0700,2009-10-01 16:29:24 -0700,JBrowse,track ui 48,new,Features with associated sequence/text,None,Not scheduled,Mitch,2009-10-01 11:30:32 -0700,2009-10-01 11:36:29 -0700,JBrowse,feature sequence 47,new,Extend wig2png to process multiple wiggle files and render them together,None,Not scheduled,Mitch,2009-09-29 15:11:12 -0700,2009-09-29 15:11:16 -0700,JBrowse,wiggle 45,new,Customizable track glyphs,None,Not scheduled,Mitch,2009-09-24 11:11:56 -0700,2009-09-24 11:16:02 -0700,JBrowse,feature rendering track 40,new,alignment tracks,None,Not scheduled,Mitch,2009-08-12 15:47:17 -0700,2009-08-12 15:47:19 -0700,JBrowse 39,new,Add grayscale option to wig2png.cc,None,Not scheduled,Ian Holmes,2009-08-10 15:00:14 -0700,2009-08-10 15:00:16 -0700,JBrowse 38,new,add optional vertical scaling field for image tracks in trackInfo.js,None,Not scheduled,Mitch,2009-08-10 14:57:18 -0700,2009-08-10 14:57:19 -0700,JBrowse 36,new,superpose tracks,None,Not scheduled,Mitch,2009-07-18 16:07:12 -0700,2009-07-18 16:07:16 -0700,JBrowse,track ui 35,new,"for wig2png, other aggregation functions than mean",None,Not scheduled,Mitch,2009-07-18 16:00:04 -0700,2009-07-18 16:00:08 -0700,JBrowse,wiggle 33,new,Add log scale option to wig2png,None,Not scheduled,Mitch,2009-07-18 14:10:19 -0700,2009-07-18 14:10:23 -0700,JBrowse,ui wiggle 32,new,include bare refseqs as legal locations to navigate to,None,Not scheduled,Mitch,2009-07-17 15:55:51 -0700,2009-07-17 15:55:52 -0700,JBrowse,ui 29,new,auto-refresh of trackInfo.json,None,Not scheduled,Mitch,2009-07-15 00:23:50 -0700,2009-07-15 00:23:52 -0700,JBrowse 28,new,"Validate GFF/BED/WIG/FASTA input, give helpful feedback",None,Not scheduled,Mitch,2009-07-08 12:56:47 -0700,2009-07-08 12:56:49 -0700,JBrowse 26,new,Documentation of wig2png C++ API,None,Not scheduled,Mitch,2009-07-07 10:53:49 -0700,2009-07-07 11:32:30 -0700,JBrowse 25,resolved,strings describing current location & visible track list (for navigateTo and showTracks) ,None,Not scheduled,JBrowse,2009-06-12 17:09:47 -0700,2009-06-23 18:15:20 -0700,JBrowse,bookmark wiki 23,new,script for initial setup,None,Not scheduled,Mitch,2009-06-09 16:27:47 -0700,2009-06-09 16:27:49 -0700,JBrowse,setup ui 22,new,autocomplete UI for name/ID search,None,Not scheduled,Mitch,2009-06-09 16:14:54 -0700,2009-06-09 16:14:59 -0700,JBrowse,ui 21,new,rubber band selection,None,Not scheduled,Mitch,2009-06-09 16:10:37 -0700,2009-06-09 16:10:38 -0700,JBrowse,ui 17,new,keep labels in view,None,Not scheduled,Mitch,2009-04-03 00:27:07 -0700,2009-04-03 00:27:12 -0700,JBrowse,track ui 10,resolved,"write ""getting started"" document",alpha 0.5,2009-01-23 00:00:00 -0800,Mitch,2009-01-21 19:10:34 -0800,2009-03-27 18:59:46 -0700,JBrowse,documentation 11,resolved,functionality for clicking on features,alpha 0.5,2009-01-23 00:00:00 -0800,Mitch,2009-02-18 13:18:34 -0800,2009-03-27 18:59:06 -0700,JBrowse 16,new,popup balloons,None,Not scheduled,Mitch,2009-03-27 17:28:54 -0700,2009-03-27 17:28:55 -0700,JBrowse,js popup ui 15,new,handle wiggle track lines,None,Not scheduled,Mitch,2009-03-27 17:17:59 -0700,2009-03-27 17:18:03 -0700,JBrowse,wiggle 2,resolved,wig2png track list generation,None,Not scheduled,Mitch,2009-01-19 21:58:05 -0800,2009-03-19 02:46:10 -0700,JBrowse,wiggle 6,resolved,sometimes blocks don't get removed correctly,None,Not scheduled,Mitch,2009-01-21 11:45:42 -0800,2009-03-04 01:41:44 -0800,JBrowse,block 5,resolved,update dojo,None,Not scheduled,Mitch,2009-01-19 23:47:22 -0800,2009-03-04 01:41:44 -0800,JBrowse,dojo 1,resolved,Sequence track,alpha 0.5,2009-01-23 00:00:00 -0800,Mitch,2009-01-19 21:46:29 -0800,2009-02-11 18:14:35 -0800,JBrowse,sequence track 8,new,"on IE, can't click on features outside of parent block",None,Not scheduled,Mitch,2009-01-21 12:05:28 -0800,2009-01-21 12:05:33 -0800,JBrowse,block 7,new,extend wig2png to convey information with color,None,Not scheduled,Mitch,2009-01-21 11:48:15 -0800,2009-01-21 11:48:17 -0800,JBrowse,wiggle