Overview - JBrowse - jbrowse

Merge branch 'jbrowse_1.7' of github.... was committed by GREGG HELT
Tuesday May 21

Commit [fc70749ded12f8dd82e0cca360e6cb9ae47c1318]
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First cut at loading GFF3 files direc... was committed by gregg 02:48 PM
Commit [643ab380ffa0751ca1a36bcd1f97274d6442c5b1]
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add a warning for track configs that ... was committed by Robert Buels 02:48 PM
Commit [d919a82b20571eef05280ec47285c6d92b7300fc]
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improve Wiggle track error handling h... was committed by Robert Buels 02:48 PM
Commit [a2ee57bf80f41cf37bf06cb569687d0dc1beb34a]
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Workaround for difficulties trying to... was committed by gregg 02:48 PM
Commit [e2006a49fd0d308c61b72e2eb0eaba4240592888]
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improve track error fill styling http... was committed by Robert Buels 02:48 PM
Commit [59332a47d3d53ab235d7520e3f85ad72c0932355]
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add a jbrowse class to the main brows... was committed by Robert Buels 02:48 PM
Commit [f5c6813486dcc25864006635b404b91ee534a6f4]
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Fixed bugs in JSONUtils GFF3 handling... was committed by gregg 02:48 PM
Commit [b37a06df403bf85a96e56a6bcd8e8dc67c1694cc]
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sigh, tundra class has to be on the `... was committed by Robert Buels 02:48 PM
Commit [411f92927dc1c0a37b5f3421fc0c1ce46ee2b99f]
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Merge branch 'maint/1.7.x' into jbrow... was committed by Robert Buels 02:48 PM
Commit [c64ffb7389ec4cde974d6c48ebb66b986e7c10c6]
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Reverting commit e2e09af8, which was ... was committed by gregg 02:48 PM
Commit [0284b38585b84760708c9e644730a0ab265f16aa]
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refactor Browser.js initialization pr... was committed by Robert Buels 02:48 PM
Commit [d5c67d66d8c762645190ab82842b8a943f48b959]
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Fixed problem with shift-click on fea... was committed by gregg 02:48 PM
Commit [1ca4ceb9f5acad811675a4874dd5b1350a1c16eb]
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Pulling in additional NCList changes ... was committed by gregg 02:48 PM
Commit [558f6fb5bfd2d2efa330c35073716d6a2c1237cc]
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Small refactoring in HTMLFeatures.ren... was committed by gregg 02:48 PM
Commit [98eaf7c673a596d159d25c61c873927a88230609]
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Give all WebApollo tracks a .webapoll... was committed by Robert Buels 02:48 PM
Commit [e65aceeb3f16b583eea6815872fb5716ee469e47]
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Merge branch 'maint/1.7.x' into jbrow... was committed by Robert Buels 02:48 PM
Commit [4e8546db45be1cc891a3eb4491065cb8a9ae7895]
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rename /jbrowse/v1/n/redraw message t... was committed by Robert Buels 02:48 PM
Commit [a034ec70911ad3fdf8f30e9f27bf7e3b97fe9e99]
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fix some hardcoded static image paths... was committed by Robert Buels 09:50 AM
Commit [fd6528c819f67082a210003237c5f1154d36ecd0]
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make faceted tracksel code a little c... was committed by Robert Buels 09:17 AM
Commit [9c57279e1ca4e36c18f71d8098f96b8d0eb4bad9]
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make faceted selector `renameFacets` ... was committed by Robert Buels 09:17 AM
Commit [e3dd15096e0b96d41d2243584dece7a1c8b81b0f]
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fix stringification of alternate_alle... was committed by Robert Buels 07:30 AM
Commit [351a15fd762596ac1249595dc7ea644a274b0785]
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change format-nclist --type arg to --... was committed by Robert Buels
Monday May 20

Commit [568cf3f1496d33347cc098be599da20b9fedef1e]
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more work on new format-nclist comman... was committed by Robert Buels 06:54 PM
Commit [cc25bad51e6aeaadc1e8a118643a5b07d78089ff]
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put new perl tests in a different dir... was committed by Robert Buels 07:02 AM
Commit [f63434319856ef20d36fa7e3c228536ffefeacd0]
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remove legacy bam-to-json.pl and its ... was committed by Robert Buels 07:02 AM
Commit [f6d65744a66b21ce873d7a59a3629e7dd4d2701f]
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remove legacy bam-to-json.pl and its ... was committed by Robert Buels 06:24 AM
Commit [870be7627eae12b8cdd03917e6a557b4ac76d13c]
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add a little test for format-nclist h... was committed by Robert Buels
Thursday May 16

Commit [49092af5a64cc7a8057c3b6164a25a2a3cc3eea0]
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add jb format-nclist for making nclis... was committed by Robert Buels 01:56 PM
Commit [caf4e215e21eef2303e73d374bd7461f899b2ff3]
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add beginning of new multi-command ./... was committed by Robert Buels 01:56 PM
Commit [12b15e60d548940368691c9b1ec66f2a798ff217]
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temporarily add src/newperl to the lo... was committed by Robert Buels 01:56 PM
Commit [ad3aa73cc4bb786d989bf66f32caa271fc470243]
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move JBlibs.pm to Bio::JBrowse::local... was committed by Robert Buels 01:56 PM
Commit [d29fa7ad589aee15716bcfbb77f0a77ce19f274e]
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don't remove _editor dijit nls files,... was committed by Robert Buels 06:16 AM
Commit [8568b9fb7a1b9f455d43ef84e82bcd0f0c2d5c5d]
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tweak wording of JS typed array messa... was committed by Robert Buels 06:16 AM
Commit [6941e38ac72dee525e0567e58aaf3a742ebf82ba]
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Continued updating circular DNA suppo... was committed by Daniel Kasenberg
Wednesday May 15

Commit [b2b490dd18076a139333bfcf063cdb4b90b4ffa0]
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comment tweaks https://github.com/GMO... was committed by Robert Buels
Tuesday May 14

Commit [256c8db3dde9fde74fa46e5a0500e2c1d786f4e1]
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fix biodb-to-json.pl crashing with no... was committed by Robert Buels 02:50 PM
Commit [326fa95beffcd7e2fff3c34f3337795fbb256373]
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Continued work on circular DNA suppor... was committed by Daniel Kasenberg 02:03 PM
Commit [58f38eb6bdd7c947031790f469e9c265bf49f55a]
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Continuing work on circular DNA suppo... was committed by Daniel Kasenberg 02:03 PM
Commit [134e90d5a91de8b60f6a98fba032b5ade9087361]
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release 1.9.3 https://github.com/GMOD... was committed by Robert Buels
Thursday May 09

Commit [ae4fff9d1caeb9fa85cf19699d5ecd31eef77049]
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tweak desc string for no-alternate VC... was committed by Robert Buels
Wednesday May 08

Commit [74e52770bb9d49384f87193254b71aba23b39c1e]
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fix VCF parser for lines that have no... was committed by Robert Buels 09:05 AM
Commit [494a594d7c50d5b977da425929c5327441e8513c]
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Began to allow user to scroll past th... was committed by Daniel Kasenberg
Tuesday May 07

Commit [63aef5dbecafa82d40bab2bcb4d59263ce030521]
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Allowed users to scroll 20% of a scre... was committed by Daniel Kasenberg 01:34 PM
Commit [7d12f1aa4e437df75726cb5abc54cf37d30c73ac]
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fix faceted tracksel select.disabled ... was committed by Robert Buels
Friday May 03

Commit [66aad8429ee36bc7d29fc9a1737082162c27f7ff]
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add HTMLVariants as a known track typ... was committed by Robert Buels
Thursday May 02

Commit [1fd9c6041745276af9465c45c3e94c2a362ed810]
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release 1.9.2 https://github.com/GMOD... was committed by Robert Buels 10:48 AM
Commit [4f3130e9938514354fa810e5944fdc58d4d285ce]
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actually, display missing genotype as... was committed by Robert Buels 10:07 AM
Commit [a1f07d182ae5c7ef05dd768c16a3bbb301302408]
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check for presence of VCF genotype da... was committed by Robert Buels 10:01 AM
Commit [2227b6dcf692f95ad8acde565558d6e3d80f7859]
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update release notes, shouttout to na... was committed by Robert Buels 09:41 AM
Commit [e4d346c8b31570587af5f74aee0ce962d047e47f]
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