Overview - JBrowse - jbrowse

parse more information out of the VCF... was committed by Robert Buels
Friday Mar 08

Commit [bc03d1e87b87ffa2d81e3dfc5609c644cec9bcd4]
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bugfix to VCF range filtering https:/... was committed by Robert Buels
Thursday Mar 07

Commit [d1418a96362432db2cbe2a04366789ada57e1077]
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tweak timeout handling in HTMLFeature... was committed by Robert Buels 04:03 PM
Commit [27ab3e15fb1d2e24337a3877325612cbc4591911]
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tweak timeout handling in HTMLFeature... was committed by Robert Buels 04:03 PM
Commit [c2e080615296a457f68efcc6e66a06d44917e095]
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tweak vcf feature output https://gith... was committed by Robert Buels 03:31 PM
Commit [aac0a238a21e26dbcd6f2c086d50417ada5dee2b]
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make HTMLFeatures show the descriptio... was committed by Robert Buels 03:31 PM
Commit [b345c74aedc16fc20290c3a9fb7666cd6c6584be]
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fix vcf header parsing https://github... was committed by Robert Buels 03:31 PM
Commit [330d5557c658e9cbbf68f5a5b73bf3165f8d2aeb]
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tweak TabixIndexedFile interface, ren... was committed by Robert Buels 02:41 PM
Commit [01f2e873f3ce30d19f46007c99c47da155d75227]
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added VCFTabix store. working and em... was committed by Robert Buels 02:41 PM
Commit [4b97bf7721f79fb8d8b852ac7c4b1c475cf2af51]
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factor stats estimation out of BAM st... was committed by Robert Buels 02:41 PM
Commit [022f7e5de5e01a8f988ba71f492ec67311ffbf11]
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add getRefSeqs method to TabixIndex h... was committed by Robert Buels 02:41 PM
Commit [61431e583594859135fb5fe8668b4a7f2e86b159]
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make TabixIndex keep track of the fir... was committed by Robert Buels 02:41 PM
Commit [a82d1bd085a780137c86962fc3930930af0a544c]
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fixed vanishin arrow bug https://gith... was committed by jsmirob 06:55 AM
Commit [fbb6d24102c8e7550dfd9dab7f486212b8f2c9a8]
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collateral changes from working with ... was committed by jsmirob 06:35 AM
Commit [cf880601cb94864265368dc5ffbc97df05a28811]
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added boolean support for subfeatures... was committed by jsmirob 06:35 AM
Commit [64974b092be1d87017aaae9117f2ec103fb13b29]
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new track style used by boolean HTMLF... was committed by jsmirob 06:35 AM
Commit [7661cfd60c3048c667004eeed261bf8cdf4ee466]
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bugfix to block merging in TabixIndex... was committed by Robert Buels
Wednesday Mar 06

Commit [b44163bbb413ab57a970fb7d3bfc117c515fd30c]
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mostly-working TabixIndexedFile store... was committed by Robert Buels 01:23 PM
Commit [82a8cfec3f3f5bdcc6342e9cc42dbd2e9c5ce6fb]
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tabix indexes actually do use virtual... was committed by Robert Buels 11:16 AM
Commit [8bdd52ad72f5e160ab5cb42a3cb1de6d9996a975]
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misc minor fixes https://github.com/G... was committed by jsmirob 07:46 AM
Commit [686fde51b9ae1eb6df024514ddd26a304504fa97]
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fixed boolean div positionning bug ht... was committed by jsmirob 07:46 AM
Commit [dc6715b0ff8559f5e2f2a4aa8a4d44e389a0bb73]
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mostly-working Tabix index reader and... was committed by Robert Buels
Tuesday Mar 05

Commit [c836da58682e035ecf893287f8ce40a5dc3e5ab4]
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fixed scrolling bug https://github.co... was committed by jsmirob
Monday Mar 04

Commit [46562ec21c516227ba5e1a675db0dda5f5558f0c]
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alternate implementation of boolean m... was committed by jsmirob 01:35 PM
Commit [a7a9cfa4a363b0e782bfe4179ca669d2b1b03471]
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added boolean support for SNPCoverage... was committed by jsmirob
Friday Mar 01

Commit [97a7ca3b6b7f1c8952ec5ad5b8e77d2f7ba9951b]
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misc minor changes https://github.com... was committed by jsmirob 01:36 PM
Commit [b4a7e0d0cf1f55b557faaaebbfb81c129d39e1c1]
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factor generic configuration stuff ou... was committed by Robert Buels 12:50 PM
Commit [9d067bc0e875f5b5030e42205cbc20428acd37cb]
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prepare-refseq.pl now supports commen... was committed by Robert Buels 12:50 PM
Commit [ff6f6b17220c95251bd7e2747e96c282e7ad23c8]
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Fixed SNPCoverage break https://githu... was committed by jsmirob 11:35 AM
Commit [732bd91748096b08ee16cfa94832c285ed827453]
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added support for boolean operations ... was committed by jsmirob 09:53 AM
Commit [86a7b821903b946a524c2c7f27352247e7e63f1a]
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Inverted spans so they mask properly.... was committed by jsmirob 09:53 AM
Commit [54673f004da1f8b9319bf944c21e69760363e827]
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added masking function to getFeatures... was committed by jsmirob 09:53 AM
Commit [a254111fdab52551d08392bc58d4120116cebf62]
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added support for boolean operations ... was committed by jsmirob 09:53 AM
Commit [5fefdc2fe7ded5478c616ef56840fc39254d6f00]
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changed the way spans are passed to c... was committed by jsmirob 09:53 AM
Commit [b6f41ac977d675967d1cef4db03007e463238972]
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added volvox example vcf data https:/... was committed by Robert Buels
Thursday Feb 28

Commit [55572627942e4112e3ea508f5c854c33f2cd8d13]
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tweak default values for "Set highlig... was committed by Robert Buels 12:32 PM
Commit [16ec56b88b95a1004026c07d920abf2f9e68afec]
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add filtering by text input to simple... was committed by Robert Buels 12:32 PM
Commit [71e3545cb1033efad3074e4461b28fbd06997cdf]
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make Simple tracklist labels all one... was committed by Robert Buels 12:32 PM
Commit [23587a76fb4252e19a1da4b68e8ba77dde01308b]
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add warning when users open bam or bi... was committed by Robert Buels
Wednesday Feb 27

Commit [461444dd56dfbfb6485b2b43f0443a87701fd1c0]
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add a description to the segX example... was committed by Robert Buels 04:18 PM
Commit [a6a761e8a3ccaba9a0ea9afd59820e1361d2fea3]
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workaround for a weird dijit bug in s... was committed by Robert Buels 04:18 PM
Commit [f12b3eeb8e6bcf1e02d4040960acc3df989115cc]
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fixed off-by-one error https://github... was committed by jsmirob 01:50 PM
Commit [06de729a9fc165d330b304238b033d410b499504]
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make locstring parsing properly switc... was committed by Robert Buels 01:43 PM
Commit [7ed5741e9201fcf17bb03309619c6f2e65e524b4]
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make the cursor over the "JBrowse" me... was committed by Robert Buels 01:43 PM
Commit [5a77b4acb597e5051ba2955e71168b11b6afde16]
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add "View->Set highlight" menu item t... was committed by Robert Buels 01:43 PM
Commit [87e58bd607f264cc9579dea658d52317846e2900]
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factor most basic dialog actionbar st... was committed by Robert Buels 01:43 PM
Commit [a02b236f0b33389592f9bf8be557f2a5ca96295a]
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modified _calculatePixelScores to use... was committed by jsmirob 01:00 PM
Commit [106e89274f497ec54bd6cb4fb186f9855a055fad]
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changed drawing method to use pixel v... was committed by jsmirob 01:00 PM
Commit [4e118b6c1a0f2cd74c52b3ba3f80215c6034d976]
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fixed span inversion method https://g... was committed by jsmirob 01:00 PM
Commit [a5b884c0d4086c399d303140b966a73191451a13]
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use new css style, rather than manual... was committed by jsmirob 01:00 PM
Commit [ce8641b765d87f85a84c4d294e23407b88546afc]
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