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refurbish bam-to-json.pl, with some t... was committed by Robert Buels
Wednesday Feb 15

Commit [3003d2a38a992527a60a9a0507dbc1ec8c1faebe]
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remove some unnecessary code cruft, t... was committed by Robert Buels 02:40 PM
Commit [b36e8529682261f4f4bd92cd9a201b996f6123b4]
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add --trackLabel to bam-to-json.pl, a... was committed by Robert Buels 02:40 PM
Commit [f28d57604d050f857463b5cc0925fa677821a641]
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port bam-to-json.pl to Pod::Usage htt... was committed by Robert Buels 10:58 AM
Commit [68d5913d9c19657b94a023b76bae6699e26793d4]
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add missing =back https://github.com/... was committed by Robert Buels 10:58 AM
Commit [b7e61dd13c9a0e5f267e749499e313386718bdb5]
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port prepare-refseqs.pl to Pod::Usage... was committed by Robert Buels 10:26 AM
Commit [e231cee45aae0871b56cda555b8f3a73a3b142bf]
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make prepare-refseqs.pl warn about mu... was committed by Robert Buels 09:20 AM
Commit [3218f1c25e1d24d81c1ff8fd641d72d3a9d221dd]
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add yeast genbank formatting test cas... was committed by Robert Buels 08:30 AM
Commit [386dc95266cb24df088643df00da5ed0930a9621]
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make sure all the scripts i have been... was committed by Robert Buels 08:21 AM
Commit [0652d418df8d9aea73e76abc19af75e6fa0a1ce0]
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factor slurp_tree() function into a t... was committed by Robert Buels 08:21 AM
Commit [3d9f994c086d27798ebfa5706bf0e01378d4c7cc]
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small improvements to prepare-refseqs... was committed by Robert Buels 08:21 AM
Commit [7e202d6a9fbbf08cf09ca6a062036d4e971312e6]
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add a unit test for prepare-refseqs.p... was committed by Robert Buels 08:21 AM
Commit [75bd3cbe696ce6791bcfc7a8a86c58d94b046260]
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correct biodb-to-json test https://gi... was committed by Robert Buels
Tuesday Feb 14

Commit [1b9faed638b1635326995bf07457e87852acb60d]
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fix gff3 subfeature fetching in flatf... was committed by Robert Buels 03:21 PM
Commit [69ca3b36692b4a39beec40bf9dcd2d26e4c5ec3c]
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more fixes to invalid volvox gff3 htt... was committed by Robert Buels 03:21 PM
Commit [680e2f12551d24188b4cf91210fa9b26a6dc1d41]
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fix malformed volvox example gff3 htt... was committed by Robert Buels 03:21 PM
Commit [b081527e29bd756205c8482a37d2a2266ca65c6c]
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make sure all the maps in the bioperl... was committed by Robert Buels 03:21 PM
Commit [b829f519c5af6ed1ecdadeeca46a71437d4169b7]
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make flatfile-to-json actually pay at... was committed by Robert Buels 02:51 PM
Commit [bc34df1e748f835457c578ddb97d128cb9bc62ad]
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flatfile-to-json getting closer to wo... was committed by Robert Buels 02:51 PM
Commit [e8fce257d2a66584196d750d0d2d13cd4939b5c3]
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flatfile-to-json getting closer to wo... was committed by Robert Buels 02:51 PM
Commit [267d79a45895db05ead4bb1ddcef377f7da11cac]
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f https://github.com/GMOD/jbrowse/com... was committed by Robert Buels 02:51 PM
Commit [f549c5f59536396100770d9436bd17507295e360]
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make flatfile-to-json actually pay at... was committed by Robert Buels 02:51 PM
Commit [21ce1607eb983d8f09492ad67ca8591f215cbf38]
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ported flatfile-to-json to the new lo... was committed by Robert Buels 09:46 AM
Commit [1ffac32913e2c29ecc1b4fdba838d6c5dfc45d21]
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correction to BioperlFlattener POD ht... was committed by Robert Buels 09:46 AM
Commit [f3daaa664e805d211d5f806aed4247b22af82fe0]
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to be more consistent, change --track... was committed by Robert Buels 09:46 AM
Commit [e380e2808c5b131de32d72801b9235d3111797c2]
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make generate-names.pl take an --out ... was committed by Robert Buels 09:46 AM
Commit [51c980f56246d4e117e463dc961bf3a69cadd1d4]
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fill in --thresh POD in generate-name... was committed by Robert Buels 09:46 AM
Commit [52e884902f89a92248b25aeb62d40c51e126ac2e]
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write POD for flatfile-to-json.pl and... was committed by Robert Buels
Monday Feb 13

Commit [3a80e9b6316d447112a66b36bad37e20f1cce941]
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write some POD for generate-names.pl,... was committed by Robert Buels 12:18 PM
Commit [dd64a1ed58a5f4c53c2dfb946a424ebc210a14dd]
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port ucsc-to-json.pl to the new featu... was committed by Robert Buels 11:25 AM
Commit [909e422d1b6bdc960616d394a522bc73b7f5588b]
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finish the nameHandler in FeatureTrac... was committed by Robert Buels 11:25 AM
Commit [1250aa5c27a30ed4b302551f4d797025c7c1e2cb]
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add a hasFeatures method to FeatureTr... was committed by Robert Buels 11:25 AM
Commit [50d64ceca642afd9b81a6ee2158620fb13f65be0]
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correct desired histogram output of u... was committed by Robert Buels 11:25 AM
Commit [0e286578cd10be30c86eb33f50e6e5ea04fce0e2]
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add (rather brittle) test on exact ou... was committed by Robert Buels 10:43 AM
Commit [8ec643de515224e89cd323fc56a9044a761e6538]
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the start of some POD for JsonFileSto... was committed by Robert Buels 10:43 AM
Commit [836476681fa4eaff9f2f6366ac655c02bbb9963e]
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add (gzipped) correct results of ucsc... was committed by Robert Buels 10:43 AM
Commit [52c42f6249779a19bf7a6ad3ec4b520b303e77da]
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bugfixes to LazyNCList unit test, mar... was committed by Robert Buels 08:47 AM
Commit [e57b92ef61cded4e1fe871473f37087eae3c00f8]
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add a --quiet option to biodb-to-json... was committed by Robert Buels
Friday Feb 10

Commit [1ca8624672f4aa5a16f398440cc792fbcd57041c]
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warning squashes and tweaks to handle... was committed by Robert Buels 03:11 PM
Commit [aedd105b085552c712a627ce28a7b1cb1d95c859]
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make NCList.pm handle the empty case ... was committed by Robert Buels 03:11 PM
Commit [675fb5ec78bff89da0b843a839e8ad8725d2f664]
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refactor BioperlFlattener's approach ... was committed by Robert Buels 03:11 PM
Commit [f8bc2125d7f477a4c153d3b5a1b5813fed2e425f]
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refactor FeatureTrack Make it keep i... was committed by Robert Buels 03:11 PM
Commit [c198ec308096329e5e6b33304cad58bf20c483c4]
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tweak NameHandler implementation a li... was committed by Robert Buels 03:11 PM
Commit [dea6f20928615bb59a3405cbb8c0bb2f439dc295]
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make biodb-to-json use the refactored... was committed by Robert Buels 03:11 PM
Commit [789d130f5022bda961281ce5d95bc1f03407e5e2]
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failing test for biodb-to-json.pl exp... was committed by Robert Buels 03:11 PM
Commit [fca8579f6bf4844640a02ad2e6b746464d8de588]
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update yeast selenium test to deal wi... was committed by Robert Buels 11:01 AM
Commit [702c3988f33f7cf8e8c7f77a4126bd24f5fa6b00]
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important bugfix to IntervalStore - h... was committed by Robert Buels
Thursday Feb 09

Commit [e16b654fc87c7496e10f83c0e4b5996dd145ac44]
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use a bigger set of test features for... was committed by Robert Buels 02:28 PM
Commit [f95670e24459012f37e04be664335aeb72a06dbd]
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actually, LazyNCList is mostly fine, ... was committed by Robert Buels 02:28 PM
Commit [06f6104da4b92456386eeb49a4559e0a50af0e52]
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failing test for LazyNCList. there i... was committed by Robert Buels 01:49 PM
Commit [0095ddec69f55462e5d7209341a3bfb3e3cc6466]
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