Overview - JBrowse - jbrowse

Cleanup https://github.com/GMOD/jbrow... was committed by Colin
Wednesday Mar 22

Commit [009f5edef7f6007237d2fbbb3186b4f367ef9497]
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Add testing for new alignment layout ... was committed by Colin 03:03 PM
Commit [61c51bbde8c2324ba62106e5ed110fd706a4c0d3]
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Unify parsing seqs https://github.com... was committed by Colin 03:03 PM
Commit [b3feb74476d68ab10f60a6b986921eaf3f9bb8a8]
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Add softclipping to paired read viewe... was committed by Colin 03:03 PM
Commit [7fe77ed4a726de43af46d59c649a60addc597b6c]
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Add basic matches display https://git... was committed by Colin 03:03 PM
Commit [1852842180db28f69b21a544837d7c1466d0de37]
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Adjust coordinates where the softclip... was committed by Colin 02:59 PM
Commit [b6605490f18a32c3f9eb1099ae7e9483db602514]
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Make multiline rendering default http... was committed by Colin 02:25 PM
Commit [d9da753d4fdef9d185e079725368f7162dca6f89]
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Make multiline rendering default http... was committed by Colin 02:15 PM
Commit [0ee090bcbd24b57321601ff9d7f6a10a21dc39d3]
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Use gaps from MD tag in renderAlignme... was committed by Colin 01:14 PM
Commit [babf635d907b7205bc2f5b27342f1738b64bba80]
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Add config option renderAlignments te... was committed by Colin 01:03 PM
Commit [852b59f37810e97dbb494ab64c061e70d9a72a98]
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Merge pull request #871 from nathandu... was committed by Nathan Dunn 12:57 PM
Commit [6ba6a53feb2a2b1ff9161c042ff50cd58d0a361c]
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updated the setup.sh https://github.c... was committed by Nathan Dunn 12:57 PM
Commit [35ecebce8020188413bb3bf75cf650b8e917ab39]
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fixed legacy install https://github.c... was committed by Nathan Dunn 12:57 PM
Commit [ffe4778970c3f1c135ab484f541438f8719426b6]
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Add example in volvox https://github.... was committed by Colin 12:48 PM
Commit [074262c2e3dc6941ec6535723366be775083b258]
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Add example in volvox https://github.... was committed by Colin 12:44 PM
Commit [bbc44debc4179d08fc021d8c25dfc4492411e5a9]
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Make the rendering of the alignment o... was committed by Colin 12:41 PM
Commit [9a4049f2cad940025846b6047648db1670390667]
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Handle case with no MD tag https://gi... was committed by Colin 12:41 PM
Commit [f3689b4ab15fb130081903338dbbee030c9bcffe]
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Add renderAlignment option https://gi... was committed by Colin 12:41 PM
Commit [4347b2bef2be2adecab22e042b962048fcd285a5]
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Change deletion data to use sam2pairw... was committed by Colin 12:41 PM
Commit [e94e0c82157f23c3d6ccce61cd1af4fb0b41df93]
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Postprocess insertion/deletion https:... was committed by Colin 12:41 PM
Commit [aa1ba4238bd7516d2994a7769536be20576bd57f]
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Readjust again https://github.com/GMO... was committed by Colin 12:41 PM
Commit [89bd8cca4e92b126838c5fd24a56d2de4e7eee2e]
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Add long read test https://github.com... was committed by Colin 12:41 PM
Commit [b09cf64d13e2ec82384cc4c65e7593d575124085]
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Get deletion sequence from refseq htt... was committed by Colin 12:41 PM
Commit [2f5f6d9fe307c96fa9d1a5901cfef317e2acd77f]
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Cleanup https://github.com/GMOD/jbrow... was committed by Colin 12:41 PM
Commit [ae3cf6b1fc043a987b43c5d215bf808dd727ec35]
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Readjust if deletion occurs, produce ... was committed by Colin 12:41 PM
Commit [13010edc3782d00ded62a217ecfd58d718966722]
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Fixup deletions https://github.com/GM... was committed by Colin 12:41 PM
Commit [184cf27d237ca96a24de2f1108a0e1c364b6c020]
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Regularize bam dialog mismatches http... was committed by Colin 12:41 PM
Commit [4105020b2ce38cfd9add4c5b62aeda5e9375b107]
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Passing all tests https://github.com/... was committed by Colin 12:41 PM
Commit [340001cb3b8e908fba19e11221ffca3f940658c8]
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Update softclipping https://github.co... was committed by Colin 12:41 PM
Commit [c8c0c07c38298c907eaf3b77eca5970cac01ca11]
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Add deletion handler https://github.c... was committed by Colin 12:41 PM
Commit [9a19b16758bed3333cb7ca1e19b6b39046198aa9]
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Add md deletion token https://github.... was committed by Colin 12:41 PM
Commit [5a1360490fa3449e3bdf7fab909460c0395db0c1]
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Fixup deletion handler test case by p... was committed by Colin 12:41 PM
Commit [beb49164ad81345e5a35e2b4c3333f8926d4d720]
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Fix typo https://github.com/GMOD/jbro... was committed by Colin 12:41 PM
Commit [d2a5beccd17df462d59267a5f5e377aa317fd9ae]
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Use mismatch https://github.com/GMOD/... was committed by Colin 12:41 PM
Commit [14827a09ec99a59d395fa480a793debec1a3567f]
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Adds a simulated large deletion for t... was committed by Keiran M Raine 12:41 PM
Commit [08c872849004f908ae9ba19f099e4d7a81eea715]
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Add insertion test https://github.com... was committed by Colin 12:41 PM
Commit [37eb782a75767527f61f593289a5763dd8708797]
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Cleanup https://github.com/GMOD/jbrow... was committed by Colin 12:41 PM
Commit [7939198a6e9eecb2414ba0829520e8de62823a1b]
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Add testing for new alignment layout ... was committed by Colin 12:41 PM
Commit [4500c5c76f0bc6a16c158c34ac0514c84f8c1990]
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Unify parsing seqs https://github.com... was committed by Colin 12:41 PM
Commit [b3528df676882089de974edc81a2104b1dee3687]
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Add softclipping to paired read viewe... was committed by Colin 12:41 PM
Commit [24348ce63027cd453b1ec697deb5766a1c6f4be8]
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Unify parsing seqs https://github.com... was committed by Colin 12:41 PM
Commit [c7abfe07f1d9912b24b730fd3bbbf582bc7bde4f]
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Add basic matches display https://git... was committed by Colin 12:41 PM
Commit [3c887308b239b70274e6b76e61b9ad6175f1f109]
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Add testing cases for sequence track ... was committed by Colin 12:36 PM
Commit [49e70ad56db93dcaef312374e4727e67a3db4f80]
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Instead of modifying substring length... was committed by Colin 12:36 PM
Commit [da486d492fdb6c7a5668f077f79c44a3729ee963]
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Add mouseover remove test case https:... was committed by Colin 12:27 PM
Commit [a10787507cb0aa8d3d39bf6058c0f6e605bbc0ea]
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Add ability to remove click when coll... was committed by Colin 12:27 PM
Commit [4daa9f6044be5ef48313f971011d83615dd88b5a]
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Update release-notes.txt, package.jso... was committed by Colin 12:07 PM
Commit [c6ce4e2b1af247b388a28b33ecbc005baaef9baf]
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Merge pull request #866 from GMOD/all... was committed by Colin Diesh 12:02 PM
Commit [639c6e937ecd0044cdee9af69ca9c31fde04a11f]
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Merge pull request #869 from GMOD/hid... was committed by Nathan Dunn 11:44 AM
Commit [12e9ef58c3dcd2093eecbfc243c52167e00c2933]
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Update release-notes.txt https://gith... was committed by Colin 11:32 AM
Commit [a3c2e93884c6098c038e81335defd06a5e41ff9f]
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