Changeset [05ef3864b5cb37573418982ede3b3857de036014] by Gregg Helt

December 20th, 2012 @ 05:36 PM

setting up webapollo_1.0 branch for release
webapollo_1.0 is branched off of jbrowse_1.7 branch
but want Perl data generation code (in ./bin and ./lib) from master
so, pulling in ./bin and ./lib directories from master via:
git checkout master -- bin lib and now committing
https://github.com/GMOD/jbrowse/commit/05ef3864b5cb37573418982ede3b...

Committed by Gregg Helt

  • A bin/add_bam_track.pl
  • A bin/add_bw_track.pl
  • A lib/ArrayRepr.pm
  • A lib/Bio/FeatureIO/bed.pm
  • A lib/Bio/JBrowse/Cmd.pm
  • A lib/Bio/JBrowse/Cmd/FlatFileToJson.pm
  • A lib/Bio/JBrowse/Cmd/FlatFileToJson/FeatureStream.pm
  • A lib/Bio/JBrowse/Cmd/FlatFileToJson/FeatureStream/BioPerl.pm
  • A lib/Bio/JBrowse/Cmd/FlatFileToJson/FeatureStream/GFF3_LowLevel.pm
  • A lib/Bio/JBrowse/Cmd/RemoveTrack.pm
  • A lib/BioperlFlattener.pm
  • A lib/DraggableFeatureTrack.pm
  • A lib/ExternalSorter.pm
  • A lib/FastaDatabase.pm
  • A lib/FeatureTrack.pm
  • A lib/GenomeDB.pm
  • A lib/ImageTrack.pm
  • A lib/ImageTrackRenderer.pm
  • A lib/IntervalStore.pm
  • A lib/JBlibs.pm
  • A lib/JsonFileStorage.pm
  • A lib/JsonGenerator.pm
  • A lib/LazyNCList.pm
  • A lib/LazyPatricia.pm
  • A lib/NCLSorter.pm
  • A lib/NCList.pm
  • A lib/NameHandler.pm
  • A lib/TiledImage.pm
  • A lib/TiledImage/DBPrimStorage.pm
  • A lib/TiledImage/MemoryPrimStorage.pm
  • A lib/TiledImage/demo-tiledimage.pl
  • A lib/TiledImage/gdtile.sql
  • A lib/TrackImage.pm
  • M bin/bam-to-json.pl
  • M bin/biodb-to-json.pl
  • M bin/draw-basepair-track.pl
  • M bin/flatfile-to-json.pl
  • M bin/generate-names.pl
  • M bin/prepare-refseqs.pl
  • M bin/remove-track.pl
  • M bin/ucsc-to-json.pl
  • M bin/wig-to-json.pl
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