Changeset [05ef3864b5cb37573418982ede3b3857de036014] by Gregg Helt

Revision 05ef3864b5cb37573418982ede3b3857de036014, committed by Gregg Helt · December 20th, 2012 @ 05:36 PM

setting up webapollo_1.0 branch for release
webapollo_1.0 is branched off of jbrowse_1.7 branch
but want Perl data generation code (in ./bin and ./lib) from master
so, pulling in ./bin and ./lib directories from master via:
git checkout master -- bin lib and now committing
https://github.com/GMOD/jbrowse/commit/05ef3864b5cb37573418982ede3b...

42 changed files

A bin/add_bam_track.pl
A bin/add_bw_track.pl
A lib/ArrayRepr.pm
A lib/Bio/FeatureIO/bed.pm
A lib/Bio/JBrowse/Cmd.pm
A lib/Bio/JBrowse/Cmd/FlatFileToJson.pm
A lib/Bio/JBrowse/Cmd/FlatFileToJson/FeatureStream.pm
A lib/Bio/JBrowse/Cmd/FlatFileToJson/FeatureStream/BioPerl.pm
A lib/Bio/JBrowse/Cmd/FlatFileToJson/FeatureStream/GFF3_LowLevel.pm
A lib/Bio/JBrowse/Cmd/RemoveTrack.pm
A lib/BioperlFlattener.pm
A lib/DraggableFeatureTrack.pm
A lib/ExternalSorter.pm
A lib/FastaDatabase.pm
A lib/FeatureTrack.pm
A lib/GenomeDB.pm
A lib/ImageTrack.pm
A lib/ImageTrackRenderer.pm
A lib/IntervalStore.pm
A lib/JBlibs.pm
A lib/JsonFileStorage.pm
A lib/JsonGenerator.pm
A lib/LazyNCList.pm
A lib/LazyPatricia.pm
A lib/NCLSorter.pm
A lib/NCList.pm
A lib/NameHandler.pm
A lib/TiledImage.pm
A lib/TiledImage/DBPrimStorage.pm
A lib/TiledImage/MemoryPrimStorage.pm
A lib/TiledImage/demo-tiledimage.pl
A lib/TiledImage/gdtile.sql
A lib/TrackImage.pm
M bin/bam-to-json.pl
M bin/biodb-to-json.pl
M bin/draw-basepair-track.pl
M bin/flatfile-to-json.pl
M bin/generate-names.pl
M bin/prepare-refseqs.pl
M bin/remove-track.pl
M bin/ucsc-to-json.pl
M bin/wig-to-json.pl