All changesets

Changeset [1f2b9d810b079d2521bc4c105547a0be8f2b07ee] by Daniel Kasenberg

Revision 1f2b9d810b079d2521bc4c105547a0be8f2b07ee, committed by Daniel Kasenberg · July 3rd, 2013 @ 06:58 AM

68 changed files

• A bin/add_bam_track.pl
• A bin/add_bw_track.pl
• A img/dark_20x3.png
• A src/JBrowse/FeatureFiltererMixin.js
• A src/JBrowse/Store/SeqFeature/GFF3/Parser.js
• A src/JBrowse/Store/SeqFeature/SPARQL.js
• A src/JBrowse/Util/FeatureFilters.js
• A src/JBrowse/Util/GFF3.js
• A tests/data/gff3_with_syncs.gff3
• A tests/data/gff3_with_syncs.result.json
• A tests/js_tests/spec/GFF3.spec.js
• A tests/js_tests/spec/SPARQLStore.spec.js
• M .gitignore
• M .gitmodules
• M Makefile.PL
• M bin/generate-names.pl
• M build/Makefile
• M docs/tutorial/data_files/volvox.gff3
• M faceted_track_selector.css
• M main.css
• M release-notes.txt
• M setup.sh
• M src/JBrowse/Browser.js
• M src/JBrowse/Component.js
• M src/JBrowse/ConfigManager.js
• M src/JBrowse/GenomeView.js
• M src/JBrowse/Model/FileBlob.js
• M src/JBrowse/Model/TabixIndex.js
• M src/JBrowse/Store/RemoteBinaryFile.js
• M src/JBrowse/Store/SeqFeature/BAM.js
• M src/JBrowse/Store/SeqFeature/BAM/File.js
• M src/JBrowse/Store/SeqFeature/BigWig/RequestWorker.js
• M src/JBrowse/Store/SeqFeature/GFF3.js
• M src/JBrowse/Store/SeqFeature/GlobalStatsEstimationMixin.js
• M src/JBrowse/Store/SeqFeature/NCList.js
• M src/JBrowse/Store/SeqFeature/NCList_v0.js
• M src/JBrowse/Store/SeqFeature/VCFTabix.js
• M src/JBrowse/Store/SeqFeature/VCFTabix/LazyFeature.js
• M src/JBrowse/Store/SeqFeature/VCFTabix/Parser.js
• M src/JBrowse/Store/TabixIndexedFile.js
• M src/JBrowse/Store/TrackMetaData.js
• M src/JBrowse/Util.js
• M src/JBrowse/View/Dialog/QuickHelp.js
• M src/JBrowse/View/Export.js
• M src/JBrowse/View/Export/GFF3.js
• M src/JBrowse/View/Export/SequinTable.js
• M src/JBrowse/View/Track/Alignments2.js
• M src/JBrowse/View/Track/BlockBased.js
• M src/JBrowse/View/Track/CanvasFeatures.js
• M src/JBrowse/View/Track/HTMLFeatures.js
• M src/JBrowse/View/Track/Wiggle/Density.js
• M src/JBrowse/View/Track/Wiggle/XYPlot.js
• M src/JBrowse/View/Track/WiggleBase.js
• M src/JBrowse/View/TrackList/Faceted.js
• M src/JBrowse/View/TrackList/Simple.js
• M src/dijit
• M src/dojo
• M src/dojox
• M src/perl5/Bio/JBrowse/Cmd/BioDBToJson.pm
• M src/perl5/Bio/JBrowse/Cmd/FormatSequences.pm
• M src/perl5/Bio/JBrowse/ExternalSorter.pm
• M src/perl5/Bio/JBrowse/HashStore.pm
• M src/perl5/JBlibs.pm
• M src/util
• M tests/js_tests/index.html
• M tests/js_tests/spec/BAM.spec.js
• M tests/perl_tests/generate-names.pl.t
• M track_styles.css