Changeset [34bbb6c3eee3134c4d3a1f8aa95873849ce4c0cc] by Robert Buels

July 5th, 2018 @ 01:20 PM

Merge pull request #1086 from GMOD/csi_index

Add CSI index support for BAM and VCF, fixes #926
https://github.com/GMOD/jbrowse/commit/34bbb6c3eee3134c4d3a1f8aa958...

Committed by Robert Buels

  • A src/JBrowse/Model/BAIIndex.js
  • A src/JBrowse/Model/CSIIndex.js
  • A tests/data/fake_large_chromosome/reads_at_1_2gb.bam
  • A tests/data/fake_large_chromosome/reads_at_1_2gb.bam.csi
  • A tests/data/fake_large_chromosome/reads_at_start.bam
  • A tests/data/fake_large_chromosome/reads_at_start.bam.bai
  • A tests/data/fake_large_chromosome/reads_at_start.bam.csi
  • A tests/data/fake_large_chromosome/seq/refSeqs.json
  • A tests/data/fake_large_chromosome/test.vcf.gz
  • A tests/data/fake_large_chromosome/test.vcf.gz.csi
  • A tests/data/fake_large_chromosome/tracks.conf
  • M src/JBrowse/Model/BGZip/VirtualOffset.js
  • M src/JBrowse/Store/SeqFeature/BAM.js
  • M src/JBrowse/Store/SeqFeature/BAM/File.js
  • M src/JBrowse/Store/SeqFeature/BAM/Util.js
  • M src/JBrowse/Store/SeqFeature/GlobalStatsEstimationMixin.js
  • M src/JBrowse/Store/SeqFeature/VCFTabix.js
  • M src/JBrowse/Store/TabixIndexedFile.js
  • M src/JBrowse/Util.js
  • M tests/js_tests/spec/VCF.spec.js
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