Changeset [35340ffd3c3ec0e6d1fc0babf2dfb5d411536d36] by Justin Reese

August 19th, 2013 @ 01:16 AM

moved VCF -> json functionality from flatfile-to-json.pl in base directory to plugin/WebApollo directory and into a separate script, vcf-to-json.pl
https://github.com/GMOD/jbrowse/commit/35340ffd3c3ec0e6d1fc0babf2df...

Committed by Justin Reese

  • A client/apollo/bin/vcf-to-json.pl
  • A client/apollo/perl5/ArrayRepr.pm
  • A client/apollo/perl5/Bio/WebApollo/Cmd.pm
  • A client/apollo/perl5/Bio/WebApollo/Cmd/NCFormatter.pm
  • A client/apollo/perl5/Bio/WebApollo/Cmd/VcfToJson.pm
  • A client/apollo/perl5/Bio/WebApollo/FeatureStream.pm
  • A client/apollo/perl5/Bio/WebApollo/FeatureStream/VCF_LowLevel.pm
  • A client/apollo/perl5/ExternalSorter.pm
  • A client/apollo/perl5/FeatureTrack.pm
  • A client/apollo/perl5/FileSlurping.pm
  • A client/apollo/perl5/GenomeDB.pm
  • A client/apollo/perl5/IntervalStore.pm
  • A client/apollo/perl5/JBlibs.pm
  • A client/apollo/perl5/JsonFileStorage.pm
  • A client/apollo/perl5/LazyNCList.pm
  • A client/apollo/perl5/NCList.pm
  • A client/apollo/perl5/NameHandler.pm
  • A client/apollo/perl5/Vcf.pm
  • A client/apollo/tests/data/heterozygous_snv.vcf
  • A client/apollo/tests/perl_tests/vcf-to-json.pl.t
  • R client/apollo/perl5/Bio/WebApollo/Cmd/FlatFileToJson.pm
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