Changeset [35340ffd3c3ec0e6d1fc0babf2dfb5d411536d36] by Justin Reese
Revision 35340ffd3c3ec0e6d1fc0babf2dfb5d411536d36,
committed by Justin Reese
· August 19th, 2013 @ 01:16 AM
moved VCF -> json functionality from flatfile-to-json.pl in
base directory to plugin/WebApollo directory and into a separate
script, vcf-to-json.pl
https://github.com/GMOD/jbrowse/commit/35340ffd3c3ec0e6d1fc0babf2df...
21 changed files
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client/apollo/bin/vcf-to-json.pl -
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client/apollo/perl5/ArrayRepr.pm -
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client/apollo/perl5/Bio/WebApollo/Cmd.pm -
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client/apollo/perl5/Bio/WebApollo/Cmd/NCFormatter.pm -
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client/apollo/perl5/Bio/WebApollo/Cmd/VcfToJson.pm -
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client/apollo/perl5/Bio/WebApollo/FeatureStream.pm -
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client/apollo/perl5/Bio/WebApollo/FeatureStream/VCF_LowLevel.pm -
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client/apollo/perl5/ExternalSorter.pm -
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client/apollo/perl5/FeatureTrack.pm -
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client/apollo/perl5/FileSlurping.pm -
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client/apollo/perl5/GenomeDB.pm -
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client/apollo/perl5/IntervalStore.pm -
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client/apollo/perl5/JBlibs.pm -
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client/apollo/perl5/JsonFileStorage.pm -
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client/apollo/perl5/LazyNCList.pm -
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client/apollo/perl5/NCList.pm -
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client/apollo/perl5/NameHandler.pm -
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client/apollo/perl5/Vcf.pm -
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client/apollo/tests/data/heterozygous_snv.vcf -
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client/apollo/tests/perl_tests/vcf-to-json.pl.t -
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client/apollo/perl5/Bio/WebApollo/Cmd/FlatFileToJson.pm