Changeset [58c3af574f97aafe23a4f0abd255f4f390bc2d98] by Robert Buels
July 13th, 2018 @ 05:08 PM
Merge branch 'dev' into cram
https://github.com/GMOD/jbrowse/commit/58c3af574f97aafe23a4f0abd255...
Committed by Robert Buels
- A img/search.png
- A plugins/NeatCanvasFeatures/.eslintrc
- A plugins/NeatCanvasFeatures/js/View/FeatureGlyph/Box.js
- A plugins/NeatCanvasFeatures/js/View/FeatureGlyph/Gene.js
- A plugins/NeatCanvasFeatures/js/View/FeatureGlyph/ProcessedTranscript.js
- A plugins/NeatCanvasFeatures/js/View/FeatureGlyph/Segments.js
- A plugins/NeatCanvasFeatures/js/View/Track/NeatFeatures.js
- A plugins/NeatHTMLFeatures/.eslintrc
- A plugins/NeatHTMLFeatures/js/View/Track/NeatFeatures.js
- A src/JBrowse/View/Dialog/Search.js
- A src/JBrowse/View/FileDialog/TrackList/_MultiIndexedFileDriver.js
- A tests/data/fake_large_chromosome/test.gff3.gz
- A tests/data/fake_large_chromosome/test.gff3.gz.csi
- A tests/data/obscure_contig_names/seq/refSeqs.json
- A tests/data/obscure_contig_names/tracks.conf
- A tests/data/volvox_formatted_names/names/114/7.json
- A tests/data/volvox_formatted_names/names/21d/1.json
- A tests/data/volvox_formatted_names/names/224/e.json
- A tests/data/volvox_formatted_names/names/28a/e.json
- A tests/data/volvox_formatted_names/names/3b8/0.json
- A tests/data/volvox_formatted_names/names/40f/d.json
- A tests/data/volvox_formatted_names/names/45d/4.json
- A tests/data/volvox_formatted_names/names/47f/c.json
- A tests/data/volvox_formatted_names/names/56d/b.json
- A tests/data/volvox_formatted_names/names/57b/2.json
- A tests/data/volvox_formatted_names/names/6ea/2.json
- A tests/data/volvox_formatted_names/names/6eb/4.json
- A tests/data/volvox_formatted_names/names/72c/b.json
- A tests/data/volvox_formatted_names/names/806/b.json
- A tests/data/volvox_formatted_names/names/84e/4.json
- A tests/data/volvox_formatted_names/names/8fd/a.json
- A tests/data/volvox_formatted_names/names/924/d.json
- A tests/data/volvox_formatted_names/names/a90/8.json
- A tests/data/volvox_formatted_names/names/aa4/a.json
- A tests/data/volvox_formatted_names/names/b47/2.json
- A tests/data/volvox_formatted_names/names/c50/5.json
- A tests/data/volvox_formatted_names/names/cf8/0.json
- A tests/data/volvox_formatted_names/names/d55/e.json
- A tests/data/volvox_formatted_names/names/ddc/5.json
- A tests/data/volvox_formatted_names/names/e5c/5.json
- A tests/data/volvox_formatted_names/names/f09/5.json
- A tests/data/volvox_formatted_names/names/fc9/d.json
- A tests/data/volvox_formatted_names/names/fcc/1.json
- A tests/data/volvox_formatted_names_incremental/names/114/7.json
- A tests/data/volvox_formatted_names_incremental/names/21d/1.json
- A tests/data/volvox_formatted_names_incremental/names/224/e.json
- A tests/data/volvox_formatted_names_incremental/names/28a/e.json
- A tests/data/volvox_formatted_names_incremental/names/3b8/0.json
- A tests/data/volvox_formatted_names_incremental/names/40f/d.json
- A tests/data/volvox_formatted_names_incremental/names/45d/4.json
- A tests/data/volvox_formatted_names_incremental/names/47f/c.json
- A tests/data/volvox_formatted_names_incremental/names/56d/b.json
- A tests/data/volvox_formatted_names_incremental/names/57b/2.json
- A tests/data/volvox_formatted_names_incremental/names/6ea/2.json
- A tests/data/volvox_formatted_names_incremental/names/6eb/4.json
- A tests/data/volvox_formatted_names_incremental/names/72c/b.json
- A tests/data/volvox_formatted_names_incremental/names/806/b.json
- A tests/data/volvox_formatted_names_incremental/names/84e/4.json
- A tests/data/volvox_formatted_names_incremental/names/8fd/a.json
- A tests/data/volvox_formatted_names_incremental/names/924/d.json
- A tests/data/volvox_formatted_names_incremental/names/a90/8.json
- A tests/data/volvox_formatted_names_incremental/names/aa4/a.json
- A tests/data/volvox_formatted_names_incremental/names/b47/2.json
- A tests/data/volvox_formatted_names_incremental/names/c50/5.json
- A tests/data/volvox_formatted_names_incremental/names/cf8/0.json
- A tests/data/volvox_formatted_names_incremental/names/d55/e.json
- A tests/data/volvox_formatted_names_incremental/names/ddc/5.json
- A tests/data/volvox_formatted_names_incremental/names/e5c/5.json
- A tests/data/volvox_formatted_names_incremental/names/f09/5.json
- A tests/data/volvox_formatted_names_incremental/names/fc9/d.json
- A tests/data/volvox_formatted_names_incremental/names/fcc/1.json
- M ".travis.yml"
- M build/Makefile
- M docs/tutorial/conf_files/volvox.json
- M plugins/NeatCanvasFeatures/README.md
- M plugins/NeatCanvasFeatures/js/NeatCanvasFeatures.profile.js
- M plugins/NeatCanvasFeatures/js/main.js
- M plugins/NeatHTMLFeatures/README.md
- M plugins/NeatHTMLFeatures/css/main.css
- M plugins/NeatHTMLFeatures/js/NeatHTMLFeatures.profile.js
- M plugins/NeatHTMLFeatures/js/main.js
- M release-notes.md
- M setup.sh
- M src/JBrowse/Browser.js
- M src/JBrowse/Store/Names/Hash.js
- M src/JBrowse/Store/SeqFeature/BAM.js
- M src/JBrowse/Store/SeqFeature/BEDTabix.js
- M src/JBrowse/Store/SeqFeature/GFF3Tabix.js
- M src/JBrowse/Store/SeqFeature/SequenceChunks.js
- M src/JBrowse/Store/SeqFeature/VCFTabix.js
- M src/JBrowse/Util.js
- M src/JBrowse/View/FileDialog/ResourceList.js
- M src/JBrowse/View/FileDialog/TrackList/BAMDriver.js
- M src/JBrowse/View/FileDialog/TrackList/GFF3TabixDriver.js
- M src/JBrowse/View/FileDialog/TrackList/VCFTabixDriver.js
- M src/JBrowse/View/Track/_FeatureDetailMixin.js
- M src/perl5/Bio/JBrowse/Cmd/IndexNames.pm
- M tests/data/fake_large_chromosome/tracks.conf
- M tests/data/volvox_formatted_names/names/007/e.json
- M tests/data/volvox_formatted_names/names/01f/3.json
- M tests/data/volvox_formatted_names/names/02e/9.json
- M tests/data/volvox_formatted_names/names/03c/5.json
- M tests/data/volvox_formatted_names/names/062/1.json
- M tests/data/volvox_formatted_names/names/06c/a.json
- M tests/data/volvox_formatted_names/names/072/f.json
- M tests/data/volvox_formatted_names/names/07a/b.json
- M tests/data/volvox_formatted_names/names/07f/6.json
- M tests/data/volvox_formatted_names/names/082/4.json
- M tests/data/volvox_formatted_names/names/09f/3.json
- M tests/data/volvox_formatted_names/names/0cb/a.json
- M tests/data/volvox_formatted_names/names/0e5/d.json
- M tests/data/volvox_formatted_names/names/0f6/e.json
- M tests/data/volvox_formatted_names/names/0fd/2.json
- M tests/data/volvox_formatted_names/names/103/2.json
- M tests/data/volvox_formatted_names/names/150/3.json
- M tests/data/volvox_formatted_names/names/164/7.json
- M tests/data/volvox_formatted_names/names/18d/b.json
- M tests/data/volvox_formatted_names/names/1a3/4.json
- M tests/data/volvox_formatted_names/names/1c0/8.json
- M tests/data/volvox_formatted_names/names/1c7/e.json
- M tests/data/volvox_formatted_names/names/1cc/a.json
- M tests/data/volvox_formatted_names/names/1ed/8.json
- M tests/data/volvox_formatted_names/names/1ee/f.json
- M tests/data/volvox_formatted_names/names/220/b.json
- M tests/data/volvox_formatted_names/names/24f/f.json
- M tests/data/volvox_formatted_names/names/25b/5.json
- M tests/data/volvox_formatted_names/names/26a/5.json
- M tests/data/volvox_formatted_names/names/26f/b.json
- M tests/data/volvox_formatted_names/names/285/c.json
- M tests/data/volvox_formatted_names/names/2a6/b.json
- M tests/data/volvox_formatted_names/names/2af/d.json
- M tests/data/volvox_formatted_names/names/2be/0.json
- M tests/data/volvox_formatted_names/names/2de/2.json
- M tests/data/volvox_formatted_names/names/354/6.json
- M tests/data/volvox_formatted_names/names/35e/6.json
- M tests/data/volvox_formatted_names/names/38b/0.json
- M tests/data/volvox_formatted_names/names/392/5.json
- M tests/data/volvox_formatted_names/names/39f/b.json
- M tests/data/volvox_formatted_names/names/3bd/4.json
- M tests/data/volvox_formatted_names/names/3e5/6.json
- M tests/data/volvox_formatted_names/names/3f9/a.json
- M tests/data/volvox_formatted_names/names/430/7.json
- M tests/data/volvox_formatted_names/names/432/7.json
- M tests/data/volvox_formatted_names/names/449/1.json
- M tests/data/volvox_formatted_names/names/454/6.json
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- M tests/data/volvox_formatted_names/names/47e/0.json
- M tests/data/volvox_formatted_names/names/480/6.json
- M tests/data/volvox_formatted_names/names/49a/b.json
- M tests/data/volvox_formatted_names/names/4d1/b.json
- M tests/data/volvox_formatted_names/names/4f2/3.json
- M tests/data/volvox_formatted_names/names/4f5/9.json
- M tests/data/volvox_formatted_names/names/4fb/4.json
- M tests/data/volvox_formatted_names/names/510/6.json
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- M tests/data/volvox_formatted_names/names/532/b.json
- M tests/data/volvox_formatted_names/names/54c/4.json
- M tests/data/volvox_formatted_names/names/564/c.json
- M tests/data/volvox_formatted_names/names/575/d.json
- M tests/data/volvox_formatted_names/names/577/0.json
- M tests/data/volvox_formatted_names/names/584/9.json
- M tests/data/volvox_formatted_names/names/59f/a.json
- M tests/data/volvox_formatted_names/names/5b3/3.json
- M tests/data/volvox_formatted_names/names/5b6/c.json
- M tests/data/volvox_formatted_names/names/63a/b.json
- M tests/data/volvox_formatted_names/names/640/2.json
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- M tests/data/volvox_formatted_names/names/686/c.json
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- M tests/data/volvox_formatted_names/names/6b3/b.json
- M tests/data/volvox_formatted_names/names/6eb/9.json
- M tests/data/volvox_formatted_names/names/6ee/c.json
- M tests/data/volvox_formatted_names/names/715/6.json
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- M tests/data/volvox_formatted_names/names/726/6.json
- M tests/data/volvox_formatted_names/names/731/2.json
- M tests/data/volvox_formatted_names/names/73b/1.json
- M tests/data/volvox_formatted_names/names/743/d.json
- M tests/data/volvox_formatted_names/names/748/0.json
- M tests/data/volvox_formatted_names/names/74e/f.json
- M tests/data/volvox_formatted_names/names/79f/7.json
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- M tests/data/volvox_formatted_names/names/7e0/a.json
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- M tests/js_tests/spec/AddFiles.spec.js
- M tests/js_tests/spec/GFF3Tabix.spec.js
- M tests/js_tests/spec/SequenceChunkStore.spec.js
- M tests/js_tests/spec/Util.spec.js
- M utils/jb_run.js
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