Changeset [5e0fedac3846758080bf75a1b782c648bfaa8c06] by Robert Buels

March 21st, 2012 @ 07:21 PM

refactored flatfile-to-json.pl to use Bio::GFF3::LowLevel::Parser,
which is not broken for files with sync marks
https://github.com/GMOD/jbrowse/commit/5e0fedac3846758080bf75a1b782...

Committed by Robert Buels

  • A lib/Script.pm
  • A lib/Script/FlatFileToJson.pm
  • A lib/Script/FlatFileToJson/FeatureStream.pm
  • A lib/Script/FlatFileToJson/FeatureStream/BioPerl.pm
  • A lib/Script/FlatFileToJson/FeatureStream/GFF3_LowLevel.pm
  • M bin/flatfile-to-json.pl
  • M tests/perl_tests/flatfile-to-json.pl.t
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