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Changeset [6a47ed47bb239f92efcdf03f3d75e042c105ad74] by jsmirob

Revision 6a47ed47bb239f92efcdf03f3d75e042c105ad74, committed by jsmirob · February 22nd, 2013 @ 08:00 AM

77 changed files

• A src/JBrowse/Errors.js
• A src/JBrowse/View/BooleanDialog/TrackTypeDialog.js
• A src/JBrowse/View/Track/Alignments2.js
• A src/JBrowse/View/Track/FeatureDetailMixin.js
• A src/JBrowse/View/Track/MismatchesMixin.js
• A src/perl5/Bio/JBrowse/PartialSorter.pm
• A tests/perl_tests/partialsorter.t
• R jbrowse_conf.json
• M Makefile.PL
• M bin/generate-names.pl
• M bin/prepare-refseqs.pl
• M bin/ucsc-to-json.pl
• M build/Makefile
• M compat_121.html
• M docs/tutorial/data_files/volvox-sorted.bam.conf
• M docs/tutorial/index.html
• M index.html
• M main.css
• M release-notes.txt
• M src/JBrowse/Browser.js
• M src/JBrowse/ConfigAdaptor/AdaptorUtil.js
• M src/JBrowse/ConfigAdaptor/JB_json_v1.js
• M src/JBrowse/GenomeView.js
• M src/JBrowse/Model/NestedFrequencyTable.js
• M src/JBrowse/Store.js
• M src/JBrowse/Store/RemoteBinaryFile.js
• M src/JBrowse/Store/SeqFeature/BAM/File.js
• M src/JBrowse/Store/SeqFeature/Boolean.js
• M src/JBrowse/View/BooleanDialog.js
• M src/JBrowse/View/FileDialog.js
• M src/JBrowse/View/FileDialog/ResourceList.js
• M src/JBrowse/View/FileDialog/TrackList/BAMDriver.js
• M src/JBrowse/View/InfoDialog.js
• M src/JBrowse/View/LocationChoiceDialog.js
• M src/JBrowse/View/Track/Alignments.js
• M src/JBrowse/View/Track/BlockBased.js
• M src/JBrowse/View/Track/BooleanTrack.js
• M src/JBrowse/View/Track/Canvas.js
• M src/JBrowse/View/Track/CanvasFeatures.js
• M src/JBrowse/View/Track/ExportMixin.js
• M src/JBrowse/View/Track/FeatureCoverage.js
• M src/JBrowse/View/Track/FixedImage.js
• M src/JBrowse/View/Track/FixedImage/Wiggle.js
• M src/JBrowse/View/Track/HTMLFeatures.js
• M src/JBrowse/View/Track/SNPCoverage.js
• M src/JBrowse/View/Track/Sequence.js
• M src/JBrowse/View/Track/Wiggle/XYPlot.js
• M src/JBrowse/View/Track/WiggleBase.js
• M src/JBrowse/View/Track/YScaleMixin.js
• M src/JBrowse/View/TrackConfigEditor.js
• M src/JBrowse/View/TrackList/Faceted.js
• M src/JBrowse/View/TrackList/Simple.js
• M src/JBrowse/main.js
• M src/perl5/Bio/JBrowse/Cmd/FormatSequences.pm
• M src/perl5/Bio/JBrowse/ExternalSorter.pm
• M src/perl5/Bio/JBrowse/HashStore.pm
• M tests/data/hg19_formatted/trackList.json
• M tests/data/volvox_formatted_names/names/0.json
• M tests/data/volvox_formatted_names/names/1.json
• M tests/data/volvox_formatted_names/names/2.json
• M tests/data/volvox_formatted_names/names/3.json
• M tests/data/volvox_formatted_names/names/4.json
• M tests/data/volvox_formatted_names/names/5.json
• M tests/data/volvox_formatted_names/names/6.json
• M tests/data/volvox_formatted_names/names/7.json
• M tests/data/volvox_formatted_names/names/8.json
• M tests/data/volvox_formatted_names/names/9.json
• M tests/data/volvox_formatted_names/names/a.json
• M tests/data/volvox_formatted_names/names/b.json
• M tests/data/volvox_formatted_names/names/c.json
• M tests/data/volvox_formatted_names/names/d.json
• M tests/data/volvox_formatted_names/names/e.json
• M tests/data/volvox_formatted_names/names/f.json
• M tests/data/volvox_formatted_names/names/meta.json
• M tests/perl_tests/generate-names.pl.t
• M tests/selenium_tests/volvox_biodb_test.py
• M track_styles.css