Changeset [72294322ecba5ff286625f56d2de23fce6baa164] by Robert Buels

May 29th, 2012 @ 03:42 PM

refactor biodb-to-json.pl to be a Bio::JBrowse::Cmd module, make the json it produces contain all available data fields. references #72
https://github.com/GMOD/jbrowse/commit/72294322ecba5ff286625f56d2de...

Committed by Robert Buels

  • A lib/Bio/JBrowse/Cmd/BioDBToJson.pm
  • A lib/Bio/JBrowse/Cmd/NCFormatter.pm
  • M bin/biodb-to-json.pl
  • M lib/Bio/JBrowse/Cmd/FlatFileToJson.pm
  • M lib/Bio/JBrowse/FeatureStream.pm
  • M lib/Bio/JBrowse/FeatureStream/BioPerl.pm
  • M lib/IntervalStore.pm
  • M tests/perl_tests/biodb-to-json.pl.t
  • M tests/perl_tests/flatfile-to-json.pl.t
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