Changeset [76ed1dc8f69a1ef0c0c62d4b0b6c6d7d71d83757] by Robert Buels

February 12th, 2018 @ 04:22 PM

Committed by Robert Buels

  • A ".editorconfig"
  • A build/set_package_versions.pl
  • A docs/tutorial/data_files/volvox.bw.gff3.gz.conf
  • A src/JBrowse/QueryParamConfigMapper.js
  • A src/JBrowse/Util/dot-object.js
  • A tests/data/hg19_formatted/tracks/knownGene/chr1/.htaccess
  • A tests/js_tests/spec/QueryParamConfigMapper.spec.js
  • A tests/js_tests/spec/SequenceTrack.spec.js
  • A tests/perl_tests/add-bam-track.pl.t
  • A tests/perl_tests/add-bw-track.pl.t
  • A tests/selenium_tests/travis_wrapper.sh
  • A utils/jb_run.js
  • A utils/jb_setup.js
  • A utils/postinstall.js
  • R bin/bam-to-json.pl
  • R bin/wig-to-json.pl
  • R postinstall.sh
  • R src/wig2png/Makefile.in
  • R src/wig2png/configure
  • R src/wig2png/configure.in
  • R src/wig2png/src/MeanRenderer.cc
  • R src/wig2png/src/WiggleParser.cc
  • R src/wig2png/src/WiggleRangeParser.cc
  • R src/wig2png/src/WiggleTileRenderer.cc
  • R src/wig2png/src/config.h.in
  • R src/wig2png/src/functions.c
  • R src/wig2png/src/macros.h
  • R src/wig2png/src/opts_list.cc
  • R src/wig2png/src/opts_list.h
  • R src/wig2png/src/wig2png.cc
  • R tests/perl_tests/bam-to-json.pl.t
  • R tests/perl_tests/wig-to-json.pl.t
  • R tests/travis.conf
  • M ".gitignore"
  • M ".travis.yml"
  • M Makefile.PL
  • M README.md
  • M bin/add-bam-track.pl
  • M bin/add-bw-track.pl
  • M bin/maker2jbrowse
  • M bin/prepare-refseqs.pl
  • M bin/ucsc-to-json.pl
  • M build/Makefile
  • M docs/tutorial/data_files/volvox.sort.gff3.gz.conf
  • M index.html
  • M package.json
  • M plugins/SVGLollipopTrack/js/SVGFeatures.js
  • M release-notes.txt
  • M sample_data/json/modencode/modencodeMetaData.csv
  • M sample_data/json/modencode/trackList.json
  • M setup.sh
  • M src/JBrowse/Browser.js
  • M src/JBrowse/GenomeView.js
  • M src/JBrowse/Store/SeqFeature/BAM.js
  • M src/JBrowse/Store/SeqFeature/GFF3Tabix.js
  • M src/JBrowse/Store/SeqFeature/UnindexedFasta.js
  • M src/JBrowse/TouchScreenSupport.js
  • M src/JBrowse/Util.js
  • M src/JBrowse/View/Track/Alignments.js
  • M src/JBrowse/View/Track/Alignments2.js
  • M src/JBrowse/View/Track/BlockBased.js
  • M src/JBrowse/View/Track/CanvasFeatures.js
  • M src/JBrowse/View/Track/Sequence.js
  • M src/JBrowse/View/Track/_AlignmentsMixin.js
  • M src/JBrowse/View/Track/_FeatureDetailMixin.js
  • M src/JBrowse/package.json
  • M src/perl5/ArrayRepr.pm
  • M src/perl5/Bio/JBrowse/Cmd/BioDBToJson.pm
  • M src/perl5/Bio/JBrowse/Cmd/FormatSequences.pm
  • M src/perl5/Bio/JBrowse/Cmd/RemoveTrack.pm
  • M src/perl5/Bio/JBrowse/FeatureStream.pm
  • M src/perl5/Bio/JBrowse/FeatureStream/BioPerl.pm
  • M src/perl5/Bio/JBrowse/FeatureStream/GFF3_LowLevel.pm
  • M src/perl5/GenomeDB.pm
  • M src/perl5/ImageTrackRenderer.pm
  • M src/perl5/JsonFileStorage.pm
  • M src/perl5/NameHandler.pm
  • M src/perl5/TiledImage.pm
  • M src/perl5/TrackImage.pm
  • M tests/data/hg19_formatted/trackList.json
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-100000-0.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-1000000-0.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-200000-0.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-2000000-0.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-500000-0.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-1.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-10.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-11.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-2.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-3.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-4.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-5.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-6.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-7.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-8.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-9.jsonz
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/trackData.jsonz
  • M tests/data/volvox_formatted_names/.htaccess
  • M tests/data/volvox_formatted_names/names/00e/5.json
  • M tests/data/volvox_formatted_names/names/01f/3.json
  • M tests/data/volvox_formatted_names/names/02e/9.json
  • M tests/data/volvox_formatted_names/names/033/e.json
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  • M tests/data/volvox_formatted_names/names/06e/7.json
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  • M tests/data/volvox_formatted_names/names/meta.json
  • M tests/data/volvox_formatted_names/trackList.json
  • M tests/data/volvox_formatted_refseqs/trackList.json
  • M tests/js_tests/index.html
  • M tests/perl_tests/flatfile-to-json.pl.t
  • M tests/perl_tests/generate-names.pl.t
  • M tests/perl_tests/prepare-refseqs.pl.t
  • M tests/selenium_tests/jbrowse_selenium/JBrowseTest.py
  • M tests/selenium_tests/jbrowse_selenium/track_selectors.py
  • M tests/selenium_tests/volvox_REST_names_test.py
  • M tests/selenium_tests/volvox_biodb_121_test.py
  • M tests/selenium_tests/volvox_biodb_test.py
  • M tests/selenium_tests/yeast_biodb_test.py
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