Changeset [7c4f380add0839b16a903b05c4717ddf0f69b05b] by Nathan Dunn
February 6th, 2018 @ 10:46 AM
Merge branch 'master' of https://github.com/GMOD/jbrowse
into add-dot-features
https://github.com/GMOD/jbrowse/commit/7c4f380add0839b16a903b05c471...
Committed by Nathan Dunn
- A tests/data/hg19_formatted/tracks/knownGene/chr1/.htaccess
- A tests/js_tests/spec/SequenceTrack.spec.js
- A tests/perl_tests/add-bw-track.pl.t
- R bin/bam-to-json.pl
- R bin/wig-to-json.pl
- R src/wig2png/Makefile.in
- R src/wig2png/configure
- R src/wig2png/configure.in
- R src/wig2png/src/MeanRenderer.cc
- R src/wig2png/src/WiggleParser.cc
- R src/wig2png/src/WiggleRangeParser.cc
- R src/wig2png/src/WiggleTileRenderer.cc
- R src/wig2png/src/config.h.in
- R src/wig2png/src/functions.c
- R src/wig2png/src/macros.h
- R src/wig2png/src/opts_list.cc
- R src/wig2png/src/opts_list.h
- R src/wig2png/src/wig2png.cc
- R tests/perl_tests/bam-to-json.pl.t
- R tests/perl_tests/wig-to-json.pl.t
- R tests/travis.conf
- M ".gitignore"
- M ".travis.yml"
- M Makefile.PL
- M README.md
- M bin/add-bw-track.pl
- M bin/maker2jbrowse
- M bin/prepare-refseqs.pl
- M bin/ucsc-to-json.pl
- M plugins/SVGLollipopTrack/js/SVGFeatures.js
- M release-notes.txt
- M sample_data/json/modencode/modencodeMetaData.csv
- M sample_data/json/modencode/trackList.json
- M setup.sh
- M src/JBrowse/Browser.js
- M src/JBrowse/GenomeView.js
- M src/JBrowse/Store/SeqFeature/UnindexedFasta.js
- M src/JBrowse/View/Track/CanvasFeatures.js
- M src/JBrowse/View/Track/Sequence.js
- M src/JBrowse/View/Track/_AlignmentsMixin.js
- M src/JBrowse/View/Track/_FeatureDetailMixin.js
- M src/perl5/ArrayRepr.pm
- M src/perl5/Bio/JBrowse/Cmd/BioDBToJson.pm
- M src/perl5/Bio/JBrowse/Cmd/FormatSequences.pm
- M src/perl5/Bio/JBrowse/Cmd/RemoveTrack.pm
- M src/perl5/Bio/JBrowse/FeatureStream.pm
- M src/perl5/Bio/JBrowse/FeatureStream/BioPerl.pm
- M src/perl5/Bio/JBrowse/FeatureStream/GFF3_LowLevel.pm
- M src/perl5/GenomeDB.pm
- M src/perl5/ImageTrackRenderer.pm
- M src/perl5/JsonFileStorage.pm
- M src/perl5/NameHandler.pm
- M src/perl5/TiledImage.pm
- M src/perl5/TrackImage.pm
- M tests/data/hg19_formatted/trackList.json
- M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-100000-0.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-1000000-0.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-200000-0.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-2000000-0.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/hist-500000-0.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-1.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-10.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-11.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-2.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-3.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-4.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-5.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-6.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-7.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-8.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/lf-9.jsonz
- M tests/data/hg19_formatted/tracks/knownGene/chr1/trackData.jsonz
- M tests/data/volvox_formatted_names/.htaccess
- M tests/data/volvox_formatted_names/names/00e/5.json
- M tests/data/volvox_formatted_names/names/01f/3.json
- M tests/data/volvox_formatted_names/names/02e/9.json
- M tests/data/volvox_formatted_names/names/033/e.json
- M tests/data/volvox_formatted_names/names/06c/a.json
- M tests/data/volvox_formatted_names/names/06e/7.json
- M tests/data/volvox_formatted_names/names/072/7.json
- M tests/data/volvox_formatted_names/names/07a/b.json
- M tests/data/volvox_formatted_names/names/082/4.json
- M tests/data/volvox_formatted_names/names/09f/3.json
- M tests/data/volvox_formatted_names/names/0f6/e.json
- M tests/data/volvox_formatted_names/names/0fd/2.json
- M tests/data/volvox_formatted_names/names/128/a.json
- M tests/data/volvox_formatted_names/names/129/d.json
- M tests/data/volvox_formatted_names/names/137/a.json
- M tests/data/volvox_formatted_names/names/14f/c.json
- M tests/data/volvox_formatted_names/names/150/3.json
- M tests/data/volvox_formatted_names/names/15b/0.json
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- M tests/data/volvox_formatted_names/names/1be/0.json
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- M tests/data/volvox_formatted_names/names/1e9/9.json
- M tests/data/volvox_formatted_names/names/1ed/8.json
- M tests/data/volvox_formatted_names/names/220/b.json
- M tests/data/volvox_formatted_names/names/241/a.json
- M tests/data/volvox_formatted_names/names/24f/f.json
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- M tests/data/volvox_formatted_names/names/265/5.json
- M tests/data/volvox_formatted_names/names/285/c.json
- M tests/data/volvox_formatted_names/names/290/d.json
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- M tests/data/volvox_formatted_names/names/3e5/6.json
- M tests/data/volvox_formatted_names/names/3f4/6.json
- M tests/data/volvox_formatted_names/names/3f9/a.json
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- M tests/data/volvox_formatted_names/names/449/1.json
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- M tests/data/volvox_formatted_names/names/480/6.json
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- M tests/data/volvox_formatted_names/names/49a/b.json
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- M tests/data/volvox_formatted_names/names/4f5/9.json
- M tests/data/volvox_formatted_names/names/508/8.json
- M tests/data/volvox_formatted_names/names/510/6.json
- M tests/data/volvox_formatted_names/names/515/1.json
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- M tests/data/volvox_formatted_names/names/51a/6.json
- M tests/data/volvox_formatted_names/names/52f/8.json
- M tests/data/volvox_formatted_names/names/532/b.json
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- M tests/data/volvox_formatted_names/names/564/c.json
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- M tests/data/volvox_formatted_names/names/577/0.json
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- M tests/data/volvox_formatted_names/names/5e1/2.json
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- M tests/data/volvox_formatted_names/names/634/0.json
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- M tests/data/volvox_formatted_names/names/660/8.json
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- M tests/data/volvox_formatted_names/names/6b5/2.json
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- M tests/data/volvox_formatted_names/names/6ee/c.json
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- M tests/data/volvox_formatted_names/names/748/0.json
- M tests/data/volvox_formatted_names/names/75d/0.json
- M tests/data/volvox_formatted_names/names/780/5.json
- M tests/data/volvox_formatted_names/names/78c/4.json
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- M tests/data/volvox_formatted_names/names/7ce/0.json
- M tests/data/volvox_formatted_names/names/7e3/3.json
- M tests/data/volvox_formatted_names/names/7ea/1.json
- M tests/data/volvox_formatted_names/names/7fa/d.json
- M tests/data/volvox_formatted_names/names/7fc/3.json
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- M tests/data/volvox_formatted_names/names/895/9.json
- M tests/data/volvox_formatted_names/names/8a5/2.json
- M tests/data/volvox_formatted_names/names/8b4/f.json
- M tests/data/volvox_formatted_names/names/8ca/f.json
- M tests/data/volvox_formatted_names/names/8d2/2.json
- M tests/data/volvox_formatted_names/names/8e1/6.json
- M tests/data/volvox_formatted_names/names/90b/6.json
- M tests/data/volvox_formatted_names/names/932/4.json
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- M tests/data/volvox_formatted_names/names/945/b.json
- M tests/data/volvox_formatted_names/names/949/1.json
- M tests/data/volvox_formatted_names/names/952/e.json
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- M tests/data/volvox_formatted_names/names/9d8/7.json
- M tests/data/volvox_formatted_names/names/9dd/b.json
- M tests/data/volvox_formatted_names/names/9df/1.json
- M tests/data/volvox_formatted_names/names/9e1/e.json
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- M tests/data/volvox_formatted_names/names/9fb/b.json
- M tests/data/volvox_formatted_names/names/a04/4.json
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- M tests/data/volvox_formatted_names/names/a12/d.json
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- M tests/data/volvox_formatted_names/names/ad1/d.json
- M tests/data/volvox_formatted_names/names/ad6/d.json
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- M tests/data/volvox_formatted_names/names/fa3/b.json
- M tests/data/volvox_formatted_names/names/fa9/a.json
- M tests/data/volvox_formatted_names/names/fb2/e.json
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- M tests/data/volvox_formatted_names/names/fce/a.json
- M tests/data/volvox_formatted_names/names/ffc/2.json
- M tests/data/volvox_formatted_names/names/meta.json
- M tests/data/volvox_formatted_names/trackList.json
- M tests/data/volvox_formatted_refseqs/trackList.json
- M tests/js_tests/index.html
- M tests/perl_tests/flatfile-to-json.pl.t
- M tests/perl_tests/generate-names.pl.t
- M tests/perl_tests/prepare-refseqs.pl.t
- M tests/selenium_tests/jbrowse_selenium/JBrowseTest.py
- M tests/selenium_tests/jbrowse_selenium/track_selectors.py
- M tests/selenium_tests/volvox_REST_names_test.py
- M tests/selenium_tests/volvox_biodb_121_test.py
- M tests/selenium_tests/volvox_biodb_test.py
- M tests/selenium_tests/yeast_biodb_test.py
- M utils/jb_run.js
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