Changeset [9d587d4900a31af13410204169d97930f18d7c83] by Robert Buels
Revision 9d587d4900a31af13410204169d97930f18d7c83,
committed by Robert Buels
· October 9th, 2013 @ 12:28 PM
Merge branch '2.x' into auth
Conflicts:
index.html src/JBrowse/Browser.js src/JBrowse/Model/FileBlob.js
src/JBrowse/View/Track/Alignments.js
src/JBrowse/View/Track/Sequence.js
https://github.com/GMOD/jbrowse/commit/9d587d4900a31af13410204169d9...
70 changed files
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plugins/RegexSequenceSearch/js/RegexSequenceSearch.profile.js -
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src/JBrowse/Util/TextIterator.js -
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src/JBrowse/View/Track/CanvasVariants.js -
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src/JBrowse/View/Track/_ExportMixin.js -
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src/JBrowse/View/Track/_FeatureDetailMixin.js -
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src/JBrowse/View/Track/_NamedFeatureFiltersMixin.js -
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src/JBrowse/View/Track/_VariantDetailMixin.js -
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src/JBrowse/View/Track/_YScaleMixin.js -
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src/JBrowse/init.js -
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build/init.js -
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src/JBrowse/View/Track/Alignments.js -
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src/JBrowse/View/Track/ExportMixin.js -
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src/JBrowse/View/Track/VariantDetailMixin.js -
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src/JBrowse/View/Track/YScaleMixin.js -
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src/perl5/Bio/JBrowse/PartialSorter.pm -
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src/perl5/FastaDatabase.pm -
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tests/perl_tests/FastaDatabase.t -
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tests/perl_tests/partialsorter.t -
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Makefile.PL -
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README.md -
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bin/flatfile-to-json.pl -
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bin/generate-names.pl -
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bin/prepare-refseqs.pl -
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build/Makefile -
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docs/tutorial/data_files/volvox.test.vcf.gz -
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docs/tutorial/data_files/volvox.test.vcf.gz.tbi -
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docs/tutorial/data_files/volvox.vcf.conf -
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index.html -
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release-notes.txt -
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src/JBrowse/Browser.js -
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src/JBrowse/FeatureFiltererMixin.js -
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src/JBrowse/Model/FileBlob.js -
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src/JBrowse/Store/SeqFeature/NCList.js -
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src/JBrowse/Store/SeqFeature/REST.js -
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src/JBrowse/Store/SeqFeature/VCFTabix.js -
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src/JBrowse/Store/SeqFeature/VCFTabix/LazyFeature.js -
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src/JBrowse/Store/SeqFeature/VCFTabix/Parser.js -
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src/JBrowse/Store/SeqFeature/_MismatchesMixin.js -
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src/JBrowse/Store/TabixIndexedFile.js -
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src/JBrowse/View/FeatureGlyph/Alignment.js -
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src/JBrowse/View/FeatureGlyph/ProcessedTranscript.js -
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src/JBrowse/View/FeatureGlyph/Segments.js -
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src/JBrowse/View/RegionBrowser.js -
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src/JBrowse/View/Track/Alignments2.js -
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src/JBrowse/View/Track/BlockBased.js -
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src/JBrowse/View/Track/CanvasFeatures.js -
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src/JBrowse/View/Track/Combination.js -
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src/JBrowse/View/Track/FixedImage/Wiggle.js -
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src/JBrowse/View/Track/HTMLFeatures.js -
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src/JBrowse/View/Track/HTMLVariants.js -
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src/JBrowse/View/Track/SNPCoverage.js -
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src/JBrowse/View/Track/Sequence.js -
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src/JBrowse/View/Track/Wiggle/Density.js -
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src/JBrowse/View/Track/Wiggle/XYPlot.js -
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src/JBrowse/View/Track/Wiggle/_Scale.js -
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src/JBrowse/View/Track/WiggleBase.js -
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src/JBrowse/View/Track/_AlignmentsMixin.js -
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src/perl5/Bio/JBrowse/Cmd/FlatFileToJson.pm -
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src/perl5/Bio/JBrowse/Cmd/FormatSequences.pm -
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src/perl5/Bio/JBrowse/FeatureStream/GFF3_LowLevel.pm -
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src/perl5/Bio/JBrowse/HashStore.pm -
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tests/perl_tests/add-json.pl.t -
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tests/perl_tests/featurestream.t -
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tests/perl_tests/maker2jbrowse.t -
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themes/base/browser.css -
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themes/base/regionbrowser.css -
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themes/base/sequence.css -
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themes/base/track_styles.css