Changeset [af1c87504a49301ef305c9be38b7da7cbf652586] by Robert Buels
July 1st, 2013 @ 05:29 AM
Merge branch 'master' into multiview
Conflicts:
css/base/faceted_track_selector.css css/base/track_styles.css
src/JBrowse/Browser.js src/JBrowse/GenomeView.js
https://github.com/GMOD/jbrowse/commit/af1c87504a49301ef305c9be38b7...
Committed by Robert Buels
- A bin/add_bam_track.pl
- A bin/add_bw_track.pl
- A img/dark_20x3.png
- A src/JBrowse/FeatureFiltererMixin.js
- A src/JBrowse/Store/SeqFeature/GFF3/Parser.js
- A src/JBrowse/Store/SeqFeature/SPARQL.js
- A src/JBrowse/Util/FeatureFilters.js
- A src/JBrowse/Util/GFF3.js
- A tests/data/gff3_with_syncs.gff3
- A tests/data/gff3_with_syncs.result.json
- A tests/js_tests/spec/GFF3.spec.js
- A tests/js_tests/spec/SPARQLStore.spec.js
- M .gitignore
- M .gitmodules
- M Makefile.PL
- M bin/generate-names.pl
- M css/base/browser.css
- M css/base/faceted_track_selector.css
- M css/base/track_styles.css
- M docs/tutorial/data_files/volvox.gff3
- M release-notes.txt
- M setup.sh
- M src/JBrowse/Browser.js
- M src/JBrowse/GenomeView.js
- M src/JBrowse/Model/FileBlob.js
- M src/JBrowse/Store/SeqFeature/BAM.js
- M src/JBrowse/Store/SeqFeature/BAM/File.js
- M src/JBrowse/Store/SeqFeature/BigWig/RequestWorker.js
- M src/JBrowse/Store/SeqFeature/GFF3.js
- M src/JBrowse/Store/SeqFeature/GlobalStatsEstimationMixin.js
- M src/JBrowse/Store/SeqFeature/NCList.js
- M src/JBrowse/Store/SeqFeature/NCList_v0.js
- M src/JBrowse/Store/SeqFeature/VCFTabix.js
- M src/JBrowse/Store/TabixIndexedFile.js
- M src/JBrowse/Store/TrackMetaData.js
- M src/JBrowse/Util.js
- M src/JBrowse/View/Dialog/QuickHelp.js
- M src/JBrowse/View/Track/Alignments2.js
- M src/JBrowse/View/Track/BlockBased.js
- M src/JBrowse/View/Track/CanvasFeatures.js
- M src/JBrowse/View/Track/ExportMixin.js
- M src/JBrowse/View/Track/HTMLFeatures.js
- M src/JBrowse/View/Track/Wiggle/Density.js
- M src/JBrowse/View/Track/Wiggle/XYPlot.js
- M src/JBrowse/View/Track/WiggleBase.js
- M src/JBrowse/View/TrackList/Faceted.js
- M src/JBrowse/View/TrackList/Simple.js
- M src/dijit
- M src/dojo
- M src/dojox
- M src/perl5/Bio/JBrowse/Cmd/FormatSequences.pm
- M src/perl5/Bio/JBrowse/HashStore.pm
- M src/util
- M tests/js_tests/index.html
- M tests/js_tests/spec/BAM.spec.js
- M tests/perl_tests/generate-names.pl.t
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