Changeset [b237a83a5d657bc3ba2e8bd16cd0950095b1c6f7] by Nathan Dunn
September 8th, 2014 @ 03:39 PM
moved web content over . . . issues with start
https://github.com/GMOD/jbrowse/commit/b237a83a5d657bc3ba2e8bd16cd0...
Committed by Nathan Dunn
- A src/main/webapp/META-INF/MANIFEST.MF
- A src/main/webapp/META-INF/context.xml
- A src/main/webapp/WEB-INF/web.xml
- A src/main/webapp/config/blat_config.xml
- A src/main/webapp/config/canned_comments.xml
- A src/main/webapp/config/chado_config.xml
- A src/main/webapp/config/config.xml
- A src/main/webapp/config/fasta_config.xml
- A src/main/webapp/config/gff3_config.xml
- A src/main/webapp/config/hibernate.xml
- A src/main/webapp/config/mapping.xml
- A src/main/webapp/config/track_name_comparator.js
- A src/main/webapp/config/translation_tables/ncbi_10_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_11_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_12_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_13_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_14_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_15_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_16_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_1_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_21_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_22_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_23_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_24_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_25_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_2_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_3_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_4_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_5_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_6_translation_table.txt
- A src/main/webapp/config/translation_tables/ncbi_9_translation_table.txt
- A src/main/webapp/configSetup.jsp
- A src/main/webapp/images/ApolloLogo_100x36.png
- A src/main/webapp/images/loading.gif
- A src/main/webapp/images/sign_in_green.png
- A src/main/webapp/images/user_icon_16px.png
- A src/main/webapp/images/webapollo_favicon.ico
- A src/main/webapp/index.html
- A src/main/webapp/js/SequenceSearch.js
- A src/main/webapp/js/jQueryUtils.js
- A src/main/webapp/jslib/DataTables-plugins/dataTablesPlugins.js
- A src/main/webapp/jslib/DataTables/css/demo_table.css
- A src/main/webapp/jslib/DataTables/images/Sorting icons.psd
- A src/main/webapp/jslib/DataTables/images/back_disabled.png
- A src/main/webapp/jslib/DataTables/images/back_enabled.png
- A src/main/webapp/jslib/DataTables/images/back_enabled_hover.png
- A src/main/webapp/jslib/DataTables/images/favicon.ico
- A src/main/webapp/jslib/DataTables/images/forward_disabled.png
- A src/main/webapp/jslib/DataTables/images/forward_enabled.png
- A src/main/webapp/jslib/DataTables/images/forward_enabled_hover.png
- A src/main/webapp/jslib/DataTables/images/sort_asc.png
- A src/main/webapp/jslib/DataTables/images/sort_asc_disabled.png
- A src/main/webapp/jslib/DataTables/images/sort_both.png
- A src/main/webapp/jslib/DataTables/images/sort_desc.png
- A src/main/webapp/jslib/DataTables/images/sort_desc_disabled.png
- A src/main/webapp/jslib/DataTables/js/jquery.dataTables.js
- A src/main/webapp/jslib/DataTables/js/jquery.dataTables.min.js
- A src/main/webapp/jslib/DataTables/js/jquery.js
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-bg_flat_0_aaaaaa_40x100.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-bg_flat_75_ffffff_40x100.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-bg_glass_55_fbf9ee_1x400.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-bg_glass_65_ffffff_1x400.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-bg_glass_75_dadada_1x400.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-bg_glass_75_e6e6e6_1x400.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-bg_glass_95_fef1ec_1x400.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-bg_highlight-soft_75_cccccc_1x100.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-icons_222222_256x240.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-icons_2e83ff_256x240.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-icons_454545_256x240.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-icons_888888_256x240.png
- A src/main/webapp/jslib/jquery-ui-menubar/images/ui-icons_cd0a0a_256x240.png
- A src/main/webapp/jslib/jquery-ui-menubar/jquery-1.8.2.js
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.accordion.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.all.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.autocomplete.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.base.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.button.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.button.js
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.core.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.core.js
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.datepicker.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.dialog.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.dialog.js
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.menu.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.menu.js
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.menubar.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.menubar.js
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.position.js
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.progressbar.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.resizable.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.selectable.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.slider.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.spinner.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.tabs.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.theme.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.tooltip.css
- A src/main/webapp/jslib/jquery-ui-menubar/jquery.ui.widget.js
- A src/main/webapp/recentChanges.jsp
- A src/main/webapp/selectTrack.jsp
- A src/main/webapp/styles/chado.css
- A src/main/webapp/styles/login.css
- A src/main/webapp/styles/recentChanges.css
- A src/main/webapp/styles/search_sequence.css
- A src/main/webapp/styles/selectTrack.css
- A src/main/webapp/styles/userPermissions.css
- A src/main/webapp/userPermissions.jsp
- A src/main/webapp/user_interfaces/browserid/addUser.jsp
- A src/main/webapp/user_interfaces/browserid/login.html
- A src/main/webapp/user_interfaces/encryptedlocaldb/AddUser.js
- A src/main/webapp/user_interfaces/encryptedlocaldb/addUser.jsp
- A src/main/webapp/user_interfaces/encryptedlocaldb/login.html
- A src/main/webapp/user_interfaces/localdb/AddUser.js
- A src/main/webapp/user_interfaces/localdb/addUser.jsp
- A src/main/webapp/user_interfaces/localdb/login.html
- R server/WebApollo/WebContent/META-INF/MANIFEST.MF
- R server/WebApollo/WebContent/META-INF/context.xml
- R server/WebApollo/WebContent/WEB-INF/web.xml
- R server/WebApollo/WebContent/config/blat_config.xml
- R server/WebApollo/WebContent/config/canned_comments.xml
- R server/WebApollo/WebContent/config/chado_config.xml
- R server/WebApollo/WebContent/config/config.xml
- R server/WebApollo/WebContent/config/fasta_config.xml
- R server/WebApollo/WebContent/config/gff3_config.xml
- R server/WebApollo/WebContent/config/hibernate.xml
- R server/WebApollo/WebContent/config/mapping.xml
- R server/WebApollo/WebContent/config/track_name_comparator.js
- R server/WebApollo/WebContent/config/translation_tables/ncbi_10_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_11_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_12_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_13_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_14_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_15_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_16_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_1_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_21_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_22_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_23_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_24_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_25_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_2_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_3_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_4_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_5_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_6_translation_table.txt
- R server/WebApollo/WebContent/config/translation_tables/ncbi_9_translation_table.txt
- R server/WebApollo/WebContent/configSetup.jsp
- R server/WebApollo/WebContent/images/ApolloLogo_100x36.png
- R server/WebApollo/WebContent/images/loading.gif
- R server/WebApollo/WebContent/images/sign_in_green.png
- R server/WebApollo/WebContent/images/user_icon_16px.png
- R server/WebApollo/WebContent/images/webapollo_favicon.ico
- R server/WebApollo/WebContent/index.html
- R server/WebApollo/WebContent/js/SequenceSearch.js
- R server/WebApollo/WebContent/js/jQueryUtils.js
- R server/WebApollo/WebContent/jslib/DataTables-plugins/dataTablesPlugins.js
- R server/WebApollo/WebContent/jslib/DataTables/css/demo_table.css
- R server/WebApollo/WebContent/jslib/DataTables/images/Sorting icons.psd
- R server/WebApollo/WebContent/jslib/DataTables/images/back_disabled.png
- R server/WebApollo/WebContent/jslib/DataTables/images/back_enabled.png
- R server/WebApollo/WebContent/jslib/DataTables/images/back_enabled_hover.png
- R server/WebApollo/WebContent/jslib/DataTables/images/favicon.ico
- R server/WebApollo/WebContent/jslib/DataTables/images/forward_disabled.png
- R server/WebApollo/WebContent/jslib/DataTables/images/forward_enabled.png
- R server/WebApollo/WebContent/jslib/DataTables/images/forward_enabled_hover.png
- R server/WebApollo/WebContent/jslib/DataTables/images/sort_asc.png
- R server/WebApollo/WebContent/jslib/DataTables/images/sort_asc_disabled.png
- R server/WebApollo/WebContent/jslib/DataTables/images/sort_both.png
- R server/WebApollo/WebContent/jslib/DataTables/images/sort_desc.png
- R server/WebApollo/WebContent/jslib/DataTables/images/sort_desc_disabled.png
- R server/WebApollo/WebContent/jslib/DataTables/js/jquery.dataTables.js
- R server/WebApollo/WebContent/jslib/DataTables/js/jquery.dataTables.min.js
- R server/WebApollo/WebContent/jslib/DataTables/js/jquery.js
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-bg_flat_0_aaaaaa_40x100.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-bg_flat_75_ffffff_40x100.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-bg_glass_55_fbf9ee_1x400.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-bg_glass_65_ffffff_1x400.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-bg_glass_75_dadada_1x400.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-bg_glass_75_e6e6e6_1x400.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-bg_glass_95_fef1ec_1x400.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-bg_highlight-soft_75_cccccc_1x100.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-icons_222222_256x240.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-icons_2e83ff_256x240.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-icons_454545_256x240.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-icons_888888_256x240.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/images/ui-icons_cd0a0a_256x240.png
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery-1.8.2.js
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.accordion.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.all.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.autocomplete.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.base.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.button.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.button.js
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.core.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.core.js
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.datepicker.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.dialog.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.dialog.js
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.menu.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.menu.js
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.menubar.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.menubar.js
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.position.js
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.progressbar.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.resizable.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.selectable.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.slider.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.spinner.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.tabs.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.theme.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.tooltip.css
- R server/WebApollo/WebContent/jslib/jquery-ui-menubar/jquery.ui.widget.js
- R server/WebApollo/WebContent/recentChanges.jsp
- R server/WebApollo/WebContent/selectTrack.jsp
- R server/WebApollo/WebContent/styles/chado.css
- R server/WebApollo/WebContent/styles/login.css
- R server/WebApollo/WebContent/styles/recentChanges.css
- R server/WebApollo/WebContent/styles/search_sequence.css
- R server/WebApollo/WebContent/styles/selectTrack.css
- R server/WebApollo/WebContent/styles/userPermissions.css
- R server/WebApollo/WebContent/userPermissions.jsp
- R server/WebApollo/WebContent/user_interfaces/browserid/addUser.jsp
- R server/WebApollo/WebContent/user_interfaces/browserid/login.html
- R server/WebApollo/WebContent/user_interfaces/encryptedlocaldb/AddUser.js
- R server/WebApollo/WebContent/user_interfaces/encryptedlocaldb/addUser.jsp
- R server/WebApollo/WebContent/user_interfaces/encryptedlocaldb/login.html
- R server/WebApollo/WebContent/user_interfaces/localdb/AddUser.js
- R server/WebApollo/WebContent/user_interfaces/localdb/addUser.jsp
- R server/WebApollo/WebContent/user_interfaces/localdb/login.html
- R server/WebApollo/lib/JSON.jar
- R server/WebApollo/lib/jackson-all-1.6.0.jar
- R server/WebApollo/lib/jdom.jar
- R server/WebApollo/lib/je-5.0.73.jar
- R server/WebApollo/lib/jetty-6.1.6.jar
- R server/WebApollo/lib/jetty-util-6.1.6.jar
- R server/WebApollo/lib/jtpl-2.0.jar
- R server/WebApollo/lib/mysql-connector-java-5.1.5-bin.jar
- R server/WebApollo/lib/postgresql-9.0-801.jdbc4.jar
- R server/WebApollo/lib/stax-api-1.0.1.jar
- R server/WebApollo/lib/stax2-2.1.jar
- R server/WebApollo/lib/staxmate-1.3.0.jar
- R server/WebApollo/lib/wstx-asl-3.2.7.jar
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