Lighthouse has a new layout. Prefer the old one? Return to the old layout, and switch back any time from the link at the top of each page.

All changesets

Changeset [b80b66c9662aa5f13ddb0a71406f4b1c3a7524a4] by Robert Buels

Revision b80b66c9662aa5f13ddb0a71406f4b1c3a7524a4, committed by Robert Buels · May 30th, 2012 @ 10:33 AM

Merge branch 'master' into autocomplete

Conflicts:

genome.css
js/Browser.js
jslib/dijit/themes/tundra/Calendar.css
jslib/dijit/themes/tundra/Calendar_rtl.css
jslib/dijit/themes/tundra/ColorPalette.css
jslib/dijit/themes/tundra/Common.css
jslib/dijit/themes/tundra/Dialog.css
jslib/dijit/themes/tundra/Dialog_rtl.css
jslib/dijit/themes/tundra/Editor.css
jslib/dijit/themes/tundra/Editor_rtl.css
jslib/dijit/themes/tundra/Menu.css
jslib/dijit/themes/tundra/Menu_rtl.css
jslib/dijit/themes/tundra/ProgressBar.css
jslib/dijit/themes/tundra/TimePicker.css
jslib/dijit/themes/tundra/TitlePane.css
jslib/dijit/themes/tundra/TitlePane_rtl.css
jslib/dijit/themes/tundra/Toolbar.css
jslib/dijit/themes/tundra/Tree.css
jslib/dijit/themes/tundra/Tree_rtl.css
jslib/dijit/themes/tundra/form/Button.css
jslib/dijit/themes/tundra/form/Checkbox.css
jslib/dijit/themes/tundra/form/Common.css
jslib/dijit/themes/tundra/form/Common_rtl.css
jslib/dijit/themes/tundra/form/RadioButton.css
jslib/dijit/themes/tundra/form/Slider.css
jslib/dijit/themes/tundra/form/Slider_rtl.css
jslib/dijit/themes/tundra/layout/AccordionContainer.css
jslib/dijit/themes/tundra/layout/BorderContainer.css
jslib/dijit/themes/tundra/layout/ContentPane.css
jslib/dijit/themes/tundra/layout/SplitContainer.css
jslib/dijit/themes/tundra/layout/TabContainer.css
jslib/dijit/themes/tundra/layout/TabContainer_rtl.css
jslib/dijit/themes/tundra/tundra.css
jslib/dojo/_firebug/firebug.css
jslib/dojo/_firebug/firebug.js
jslib/dojo/dojo.js
jslib/dojo/dojo.js.uncompressed.js
jslib/dojo/jbrowse_dojo.js
jslib/dojo/jbrowse_dojo.js.uncompressed.js
jslib/dojo/nls/jbrowse_dojo_ar.js
jslib/dojo/nls/jbrowse_dojo_he-il.js
jslib/dojo/nls/jbrowse_dojo_he.js
jslib/dojo/nls/jbrowse_dojo_pl.js
jslib/dojo/nls/jbrowse_dojo_pt-br.js
jslib/dojo/nls/jbrowse_dojo_pt.js
jslib/dojo/nls/jbrowse_dojo_zh-cn.js
jslib/dojo/nls/jbrowse_dojo_zh.js
jslib/dojo/resources/dnd.css
jslib/dojo/resources/dojo.css

https://github.com/GMOD/jbrowse/commit/b80b66c9662aa5f13ddb0a71406f...

569 changed files

  • A Makefile.deploy
  • A README.md
  • A bin/jbdoc
  • A bin/remove-track.pl
  • A compat_121.html
  • A docs/examples/embedded_mode.html
  • A docs/examples/format_tomato.sh
  • A events.md
  • A faceted_track_selector.css
  • A feature_styles.css
  • A img/left_arrow.png
  • A img/red_x.png
  • A img/spinner.gif
  • A img/tracklist_bg.png
  • A js/Animation.js
  • A js/BehaviorManager.js
  • A js/ConfigAdaptor/JB_json_v0.js
  • A js/ConfigAdaptor/JB_json_v1.js
  • A js/ImageTrack/Wiggle.js
  • A js/Model/TrackMetaData.js
  • A js/Model/modEncodeTrackMetadata.js
  • A js/NCList_v0.js
  • A js/Ruler.js
  • A js/SeqFeatureStore.js
  • A js/SeqFeatureStore/NCList.js
  • A js/SeqFeatureStore/NCList_v0.js
  • A js/SequenceStore/StaticChunked.js
  • A js/Slider.js
  • A js/Store.js
  • A js/TiledImageStore/Fixed.js
  • A js/TiledImageStore/Fixed_v0.js
  • A js/Track/YScaleMixin.js
  • A js/View/TrackList/Faceted.js
  • A js/View/TrackList/Null.js
  • A js/View/TrackList/Simple.js
  • A js/Zoomer.js
  • A jslib/dijit/themes/tundra/TimePicker_rtl.css
  • A jslib/dijit/themes/tundra/form/Select.css
  • A jslib/dijit/themes/tundra/tundra_rtl.css
  • A jslib/dojo/jbrowse_dojo_faceted_tracksel.js
  • A jslib/dojo/nls/ar/colors.js
  • A jslib/dojo/nls/ca/colors.js
  • A jslib/dojo/nls/cs/colors.js
  • A jslib/dojo/nls/da/colors.js
  • A jslib/dojo/nls/de/colors.js
  • A jslib/dojo/nls/el/colors.js
  • A jslib/dojo/nls/es/colors.js
  • A jslib/dojo/nls/fi/colors.js
  • A jslib/dojo/nls/fr/colors.js
  • A jslib/dojo/nls/he/colors.js
  • A jslib/dojo/nls/hu/colors.js
  • A jslib/dojo/nls/it/colors.js
  • A jslib/dojo/nls/ja/colors.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_ROOT.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_ar.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_ca.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_cs.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_da.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_de-de.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_de.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_el.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_en-gb.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_en-us.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_en.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_es-es.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_es.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_fi-fi.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_fi.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_fr-fr.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_fr.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_he-il.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_he.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_hu.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_it-it.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_it.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_ja-jp.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_ja.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_ko-kr.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_ko.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_nb.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_nl-nl.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_nl.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_pl.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_pt-br.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_pt-pt.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_pt.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_ru.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_sk.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_sl.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_sv.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_th.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_tr.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_xx.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_zh-cn.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_zh-tw.js
  • A jslib/dojo/nls/jbrowse_dojo_faceted_tracksel_zh.js
  • A jslib/dojo/nls/jbrowse_dojo_nb.js
  • A jslib/dojo/nls/kk/colors.js
  • A jslib/dojo/nls/ko/colors.js
  • A jslib/dojo/nls/nb/colors.js
  • A jslib/dojo/nls/nl/colors.js
  • A jslib/dojo/nls/pl/colors.js
  • A jslib/dojo/nls/pt-pt/colors.js
  • A jslib/dojo/nls/pt/colors.js
  • A jslib/dojo/nls/ro/colors.js
  • A jslib/dojo/nls/ru/colors.js
  • A jslib/dojo/nls/sk/colors.js
  • A jslib/dojo/nls/sl/colors.js
  • A jslib/dojo/nls/sv/colors.js
  • A jslib/dojo/nls/th/colors.js
  • A jslib/dojo/nls/tr/colors.js
  • A jslib/dojo/nls/zh-tw/colors.js
  • A jslib/dojo/nls/zh/colors.js
  • A jslib/dojox/grid/resources/Expando.html
  • A jslib/dojox/grid/resources/Grid.css
  • A jslib/dojox/grid/resources/Grid_rtl.css
  • A jslib/dojox/grid/resources/View.html
  • A jslib/dojox/grid/resources/_Grid.html
  • A jslib/dojox/grid/resources/claroGrid.css
  • A jslib/dojox/grid/resources/images/grid_dx_gradient.gif
  • A jslib/dojox/grid/resources/images/grid_sort_down.gif
  • A jslib/dojox/grid/resources/images/grid_sort_up.gif
  • A jslib/dojox/grid/resources/images/header.png
  • A jslib/dojox/grid/resources/images/header_shadow.png
  • A jslib/dojox/grid/resources/images/row_back.png
  • A jslib/dojox/grid/resources/images/tabEnabled_rotated.png
  • A jslib/dojox/grid/resources/images/tabHover_rotated.png
  • A jslib/dojox/grid/resources/images/td_button_down.png
  • A jslib/dojox/grid/resources/nihiloGrid.css
  • A jslib/dojox/grid/resources/soriaGrid.css
  • A jslib/dojox/grid/resources/tundraGrid.css
  • A jslib/jsdoc_toolkit-2.4.0/README.txt
  • A jslib/jsdoc_toolkit-2.4.0/app/frame.js
  • A jslib/jsdoc_toolkit-2.4.0/app/frame/Chain.js
  • A jslib/jsdoc_toolkit-2.4.0/app/frame/Dumper.js
  • A jslib/jsdoc_toolkit-2.4.0/app/frame/Hash.js
  • A jslib/jsdoc_toolkit-2.4.0/app/frame/Link.js
  • A jslib/jsdoc_toolkit-2.4.0/app/frame/Namespace.js
  • A jslib/jsdoc_toolkit-2.4.0/app/frame/Opt.js
  • A jslib/jsdoc_toolkit-2.4.0/app/frame/Reflection.js
  • A jslib/jsdoc_toolkit-2.4.0/app/frame/String.js
  • A jslib/jsdoc_toolkit-2.4.0/app/frame/Testrun.js
  • A jslib/jsdoc_toolkit-2.4.0/app/handlers/FOODOC.js
  • A jslib/jsdoc_toolkit-2.4.0/app/handlers/XMLDOC.js
  • A jslib/jsdoc_toolkit-2.4.0/app/handlers/XMLDOC/DomReader.js
  • A jslib/jsdoc_toolkit-2.4.0/app/handlers/XMLDOC/XMLDoc.js
  • A jslib/jsdoc_toolkit-2.4.0/app/handlers/XMLDOC/XMLParse.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/DocComment.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/DocTag.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/JsDoc.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/JsPlate.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/Lang.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/Parser.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/PluginManager.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/Symbol.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/SymbolSet.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/TextStream.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/Token.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/TokenReader.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/TokenStream.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/Util.js
  • A jslib/jsdoc_toolkit-2.4.0/app/lib/JSDOC/Walker.js
  • A jslib/jsdoc_toolkit-2.4.0/app/main.js
  • A jslib/jsdoc_toolkit-2.4.0/app/plugins/commentSrcJson.js
  • A jslib/jsdoc_toolkit-2.4.0/app/plugins/frameworkPrototype.js
  • A jslib/jsdoc_toolkit-2.4.0/app/plugins/functionCall.js
  • A jslib/jsdoc_toolkit-2.4.0/app/plugins/publishSrcHilite.js
  • A jslib/jsdoc_toolkit-2.4.0/app/plugins/symbolLink.js
  • A jslib/jsdoc_toolkit-2.4.0/app/plugins/tagParamConfig.js
  • A jslib/jsdoc_toolkit-2.4.0/app/plugins/tagSynonyms.js
  • A jslib/jsdoc_toolkit-2.4.0/app/run.js
  • A jslib/jsdoc_toolkit-2.4.0/app/t/TestDoc.js
  • A jslib/jsdoc_toolkit-2.4.0/app/t/runner.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/addon.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/anon_inner.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/augments.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/augments2.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/borrows.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/borrows2.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/config.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/constructs.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/encoding.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/encoding_other.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/event.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/exports.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/functions_anon.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/functions_nested.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/global.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/globals.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/ignore.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/inner.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/jsdoc_test.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/lend.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/memberof.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/memberof2.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/memberof3.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/memberof_constructor.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/module.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/multi_methods.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/name.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/namespace_nested.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/nocode.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/oblit_anon.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/overview.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/param_inline.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/params_optional.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/prototype.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/prototype_nested.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/prototype_oblit.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/prototype_oblit_constructor.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/public.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/scripts/code.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/scripts/notcode.txt
  • A jslib/jsdoc_toolkit-2.4.0/app/test/shared.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/shared2.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/shortcuts.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/static_this.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/synonyms.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/tosource.js
  • A jslib/jsdoc_toolkit-2.4.0/app/test/variable_redefine.js
  • A jslib/jsdoc_toolkit-2.4.0/changes.txt
  • A jslib/jsdoc_toolkit-2.4.0/conf/sample.conf
  • A jslib/jsdoc_toolkit-2.4.0/java/build.xml
  • A jslib/jsdoc_toolkit-2.4.0/java/build_1.4.xml
  • A jslib/jsdoc_toolkit-2.4.0/java/classes/js.jar
  • A jslib/jsdoc_toolkit-2.4.0/java/src/JsDebugRun.java
  • A jslib/jsdoc_toolkit-2.4.0/java/src/JsRun.java
  • A jslib/jsdoc_toolkit-2.4.0/jsdebug.jar
  • A jslib/jsdoc_toolkit-2.4.0/jsrun.jar
  • A jslib/jsdoc_toolkit-2.4.0/jsrun.sh
  • A jslib/jsdoc_toolkit-2.4.0/templates/jsdoc/allclasses.tmpl
  • A jslib/jsdoc_toolkit-2.4.0/templates/jsdoc/allfiles.tmpl
  • A jslib/jsdoc_toolkit-2.4.0/templates/jsdoc/class.tmpl
  • A jslib/jsdoc_toolkit-2.4.0/templates/jsdoc/index.tmpl
  • A jslib/jsdoc_toolkit-2.4.0/templates/jsdoc/publish.js
  • A jslib/jsdoc_toolkit-2.4.0/templates/jsdoc/static/default.css
  • A jslib/jsdoc_toolkit-2.4.0/templates/jsdoc/static/header.html
  • A jslib/jsdoc_toolkit-2.4.0/templates/jsdoc/static/index.html
  • A jslib/jsdoc_toolkit-2.4.0/templates/jsdoc/symbol.tmpl
  • A lib/Bio/JBrowse/Cmd.pm
  • A lib/Bio/JBrowse/Cmd/BioDBToJson.pm
  • A lib/Bio/JBrowse/Cmd/FlatFileToJson.pm
  • A lib/Bio/JBrowse/Cmd/NCFormatter.pm
  • A lib/Bio/JBrowse/Cmd/RemoveTrack.pm
  • A lib/Bio/JBrowse/FeatureStream.pm
  • A lib/Bio/JBrowse/FeatureStream/BioPerl.pm
  • A lib/Bio/JBrowse/FeatureStream/GFF3_LowLevel.pm
  • A lib/JBlibs.pm
  • A main.css
  • A sample_data/json/modencode/.htaccess
  • A sample_data/json/modencode/modencodeMetaData.json
  • A sample_data/json/modencode/names/root.json
  • A sample_data/json/modencode/seq/ctgA/0.txt
  • A sample_data/json/modencode/seq/ctgA/1.txt
  • A sample_data/json/modencode/seq/ctgA/2.txt
  • A sample_data/json/modencode/seq/ctgB/0.txt
  • A sample_data/json/modencode/seq/refSeqs.json
  • A sample_data/json/modencode/trackList.json
  • A sample_data/json/modencode/trackMeta.csv
  • A sample_data/json/modencode/tracks/volvox_microarray.wig
  • A sample_data/raw/tomato.json
  • A setup.sh
  • A tests/data/AU9/seq/refSeqs.json
  • A tests/data/AU9/single_au9_gene.gff3
  • A tests/data/SL2.40ch10_sample.gff3
  • A tests/data/au9_scaffold_subset.gff3
  • A tests/data/au9_scaffold_subset_sync.gff3
  • A tests/data/volvox_formatted_1_2_1/names/root.json
  • A tests/data/volvox_formatted_1_2_1/refSeqs.js
  • A tests/data/volvox_formatted_1_2_1/seq/ctgA/0.txt
  • A tests/data/volvox_formatted_1_2_1/seq/ctgA/1.txt
  • A tests/data/volvox_formatted_1_2_1/seq/ctgA/2.txt
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/1.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/10.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/11.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/12.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/13.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/14.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/15.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/16.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/17.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/18.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/19.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/2.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/20.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/21.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/22.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/23.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/24.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/3.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/4.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/5.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/6.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/7.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/8.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1/9.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/10/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/10/1.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/10/2.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/100/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/1000/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/10000/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/100000/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/1.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/10.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/11.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/12.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/2.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/3.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/4.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/5.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/6.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/7.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/8.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2/9.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/20/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/20/1.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/200/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/2000/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/20000/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/5/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/5/1.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/5/2.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/5/3.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/5/4.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/50/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/500/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/5000/0.png
  • A tests/data/volvox_formatted_1_2_1/tiles/volvox_microarray.wig/ctgA/50000/0.png
  • A tests/data/volvox_formatted_1_2_1/trackInfo.js
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/hist-10000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/hist-50000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/hist-200000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/hist-50000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/hist-10000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/hist-200000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/hist-10000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/hist-50000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/NameTest/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/hist-50000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/ReadingFrame/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/hist-200000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/names.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/Transcript/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-100-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-1000-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-20-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-200-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-40-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/hist-400-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-0.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-1.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-2.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/lazyfeatures-3.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/bam_simulated/trackData.json
  • A tests/data/volvox_formatted_1_2_1/tracks/ctgA/volvox_microarray.wig.json
  • A tests/perl_tests/bin/make_fake_modencode.pl
  • A tests/perl_tests/remove-track.pl.t
  • A tests/selenium_tests/jbrowse_selenium/JBrowseTest.py
  • A tests/selenium_tests/jbrowse_selenium/__init__.py
  • A tests/selenium_tests/jbrowse_selenium/jbrowse_selenium.py
  • A tests/selenium_tests/jbrowse_selenium/track_selectors.py
  • A tests/selenium_tests/modencode_faceted_tracksel_test.py
  • A tests/selenium_tests/volvox_biodb_121_test.py
  • A wig2png/Makefile.in
  • A wig2png/configure
  • A wig2png/configure.in
  • A wig2png/src/MeanRenderer.cc
  • A wig2png/src/WiggleParser.cc
  • A wig2png/src/WiggleRangeParser.cc
  • A wig2png/src/WiggleTileRenderer.cc
  • A wig2png/src/config.h.in
  • A wig2png/src/functions.c
  • A wig2png/src/macros.h
  • A wig2png/src/opts_list.cc
  • A wig2png/src/opts_list.h
  • A wig2png/src/wig2png.cc
  • A xt/selenium_tests/yeast_biodb_compressed_test.py
  • R Makefile.in
  • R VERSION
  • R img/closedhand.cur
  • R img/minus-transcript-head.png
  • R img/openhand.cur
  • R img/plus-transcript-head.png
  • R img/transcript-head.png
  • R img/transcript-head.svg
  • R jar/shrinksafe.jar
  • R jar/js.jar
  • R src/config.h
  • R src/wig2png.cc
  • R configure
  • R configure.in
  • R src/config.h.in
  • R src/macros.h
  • R src/opts_list.cc
  • R src/opts_list.h
  • M .gitignore
  • M .gitmodules
  • M INSTALL
  • M Makefile.PL
  • M bin/bam-to-json.pl
  • M bin/biodb-to-json.pl
  • M bin/draw-basepair-track.pl
  • M bin/flatfile-to-json.pl
  • M bin/generate-names.pl
  • M bin/prepare-refseqs.pl
  • M bin/ucsc-to-json.pl
  • M bin/wig-to-json.pl
  • M dist.ini
  • M docs/config-desc.html
  • M docs/config.html
  • M docs/docs.css
  • M docs/featureglyphs.html
  • M docs/tutorial/conf_files/volvox.json
  • M docs/tutorial/index.html
  • M genome.css
  • M img/minus-arrowhead.png
  • M img/plus-arrowhead.png
  • M img/right_arrow.png
  • M index.html
  • M js/ArrayRepr.js
  • M js/Browser.js
  • M js/FeatureTrack.js
  • M js/GenomeView.js
  • M js/GridTrack.js
  • M js/ImageTrack.js
  • M js/Layout.js
  • M js/LazyArray.js
  • M js/LazyPatricia.js
  • M js/NCList.js
  • M js/SequenceTrack.js
  • M js/StaticTrack.js
  • M js/Track.js
  • M js/Util.js
  • M js/touchJBrowse.js
  • M jslib/dijit/themes/tundra/Calendar.css
  • M jslib/dijit/themes/tundra/Calendar_rtl.css
  • M jslib/dijit/themes/tundra/ColorPalette.css
  • M jslib/dijit/themes/tundra/Common.css
  • M jslib/dijit/themes/tundra/Dialog.css
  • M jslib/dijit/themes/tundra/Dialog_rtl.css
  • M jslib/dijit/themes/tundra/Editor.css
  • M jslib/dijit/themes/tundra/Editor_rtl.css
  • M jslib/dijit/themes/tundra/Menu.css
  • M jslib/dijit/themes/tundra/Menu_rtl.css
  • M jslib/dijit/themes/tundra/ProgressBar.css
  • M jslib/dijit/themes/tundra/TimePicker.css
  • M jslib/dijit/themes/tundra/TitlePane.css
  • M jslib/dijit/themes/tundra/TitlePane_rtl.css
  • M jslib/dijit/themes/tundra/Toolbar.css
  • M jslib/dijit/themes/tundra/Tree.css
  • M jslib/dijit/themes/tundra/Tree_rtl.css
  • M jslib/dijit/themes/tundra/form/Button.css
  • M jslib/dijit/themes/tundra/form/Checkbox.css
  • M jslib/dijit/themes/tundra/form/Common.css
  • M jslib/dijit/themes/tundra/form/Common_rtl.css
  • M jslib/dijit/themes/tundra/form/RadioButton.css
  • M jslib/dijit/themes/tundra/form/Slider.css
  • M jslib/dijit/themes/tundra/form/Slider_rtl.css
  • M jslib/dijit/themes/tundra/images/titleBar.png
  • M jslib/dijit/themes/tundra/layout/AccordionContainer.css
  • M jslib/dijit/themes/tundra/layout/BorderContainer.css
  • M jslib/dijit/themes/tundra/layout/ContentPane.css
  • M jslib/dijit/themes/tundra/layout/SplitContainer.css
  • M jslib/dijit/themes/tundra/layout/TabContainer.css
  • M jslib/dijit/themes/tundra/layout/TabContainer_rtl.css
  • M jslib/dijit/themes/tundra/tundra.css
  • M jslib/dojo/_firebug/firebug.css
  • M jslib/dojo/_firebug/firebug.js
  • M jslib/dojo/dojo.js
  • M jslib/dojo/dojo.js.uncompressed.js
  • M jslib/dojo/jbrowse_dojo.js
  • M jslib/dojo/jbrowse_dojo.js.uncompressed.js
  • M jslib/dojo/nls/jbrowse_dojo_ROOT.js
  • M jslib/dojo/nls/jbrowse_dojo_ar.js
  • M jslib/dojo/nls/jbrowse_dojo_ca.js
  • M jslib/dojo/nls/jbrowse_dojo_cs.js
  • M jslib/dojo/nls/jbrowse_dojo_da.js
  • M jslib/dojo/nls/jbrowse_dojo_de-de.js
  • M jslib/dojo/nls/jbrowse_dojo_de.js
  • M jslib/dojo/nls/jbrowse_dojo_el.js
  • M jslib/dojo/nls/jbrowse_dojo_en-gb.js
  • M jslib/dojo/nls/jbrowse_dojo_en-us.js
  • M jslib/dojo/nls/jbrowse_dojo_en.js
  • M jslib/dojo/nls/jbrowse_dojo_es-es.js
  • M jslib/dojo/nls/jbrowse_dojo_es.js
  • M jslib/dojo/nls/jbrowse_dojo_fi-fi.js
  • M jslib/dojo/nls/jbrowse_dojo_fi.js
  • M jslib/dojo/nls/jbrowse_dojo_fr-fr.js
  • M jslib/dojo/nls/jbrowse_dojo_fr.js
  • M jslib/dojo/nls/jbrowse_dojo_he-il.js
  • M jslib/dojo/nls/jbrowse_dojo_he.js
  • M jslib/dojo/nls/jbrowse_dojo_hu.js
  • M jslib/dojo/nls/jbrowse_dojo_it-it.js
  • M jslib/dojo/nls/jbrowse_dojo_it.js
  • M jslib/dojo/nls/jbrowse_dojo_ja-jp.js
  • M jslib/dojo/nls/jbrowse_dojo_ja.js
  • M jslib/dojo/nls/jbrowse_dojo_ko-kr.js
  • M jslib/dojo/nls/jbrowse_dojo_ko.js
  • M jslib/dojo/nls/jbrowse_dojo_nl-nl.js
  • M jslib/dojo/nls/jbrowse_dojo_nl.js
  • M jslib/dojo/nls/jbrowse_dojo_pl.js
  • M jslib/dojo/nls/jbrowse_dojo_pt-br.js
  • M jslib/dojo/nls/jbrowse_dojo_pt-pt.js
  • M jslib/dojo/nls/jbrowse_dojo_pt.js
  • M jslib/dojo/nls/jbrowse_dojo_ru.js
  • M jslib/dojo/nls/jbrowse_dojo_sk.js
  • M jslib/dojo/nls/jbrowse_dojo_sl.js
  • M jslib/dojo/nls/jbrowse_dojo_sv.js
  • M jslib/dojo/nls/jbrowse_dojo_th.js
  • M jslib/dojo/nls/jbrowse_dojo_tr.js
  • M jslib/dojo/nls/jbrowse_dojo_xx.js
  • M jslib/dojo/nls/jbrowse_dojo_zh-cn.js
  • M jslib/dojo/nls/jbrowse_dojo_zh-tw.js
  • M jslib/dojo/nls/jbrowse_dojo_zh.js
  • M jslib/dojo/resources/_modules.js
  • M jslib/dojo/resources/dnd.css
  • M jslib/dojo/resources/dojo.css
  • M jslib/dojo/resources/iframe_history.html
  • M jslib/dojo/resources/images/dndNoCopy.png
  • M jslib/dojo/resources/images/dndNoMove.png
  • M jslib/jbrowse_dojo.profile.js
  • M lib/BioperlFlattener.pm
  • M lib/FeatureTrack.pm
  • M lib/GenomeDB.pm
  • M lib/ImageTrack.pm
  • M lib/IntervalStore.pm
  • M lib/JsonFileStorage.pm
  • M lib/LazyNCList.pm
  • M release-notes.txt
  • M tests/data/base_pairing/mahoney_formatted/trackList.json
  • M tests/data/hg19_formatted/trackList.json
  • M tests/data/hg19_formatted/tracks/knownGene/chr1/trackData.jsonz
  • M tests/data/volvox_formatted_refseqs/trackList.json
  • M tests/perl_tests/00.compile.t
  • M tests/perl_tests/FastaDatabase.t
  • M tests/perl_tests/bam-to-json.pl.t
  • M tests/perl_tests/biodb-to-json.pl.t
  • M tests/perl_tests/draw-basepair-track.pl.t
  • M tests/perl_tests/fakefasta.t
  • M tests/perl_tests/flatfile-to-json.pl.t
  • M tests/perl_tests/lazy_nclist.t
  • M tests/perl_tests/lib/FileSlurping.pm
  • M tests/perl_tests/nclist.t
  • M tests/perl_tests/prepare-refseqs.pl.t
  • M tests/perl_tests/ucsc-to-json.pl.t
  • M tests/perl_tests/wig-to-json.pl.t
  • M tests/selenium_tests/volvox_biodb_test.py
  • M tests/selenium_tests/yeast_biodb_test.py