Changeset [b932909bc666236f306f2351e38b75cd2f92c601] by Robert Buels

May 1st, 2018 @ 01:25 PM

Merge branch '551_perl_conf_includes' into dev, fixes #551
https://github.com/GMOD/jbrowse/commit/b932909bc666236f306f2351e38b...

Committed by Robert Buels

  • A src/perl5/Bio/JBrowse/ConfigurationManager.pm
  • A tests/data/conf/tracks.conf
  • A tests/data/volvox_formatted_names_incremental/.htaccess
  • A tests/data/volvox_formatted_names_incremental/names/007/e.json
  • A tests/data/volvox_formatted_names_incremental/names/00e/5.json
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  • A tests/data/volvox_formatted_names_incremental/names/meta.json
  • A tests/data/volvox_formatted_names_incremental/seq/refSeqs.json
  • A tests/data/volvox_formatted_names_incremental/trackList.json
  • A tests/data/volvox_formatted_names_incremental/tracks.conf
  • A tests/data/volvox_formatted_names_incremental/tracks/Alignments/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/CDS/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/Clones/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/EST/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/ExampleFeatures/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/ExampleFeatures/ctgB/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/Genes/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/Motifs/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/NameTest/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/ReadingFrame/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/Transcript/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/snps/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/volvox.sort.gff3.gz.1
  • A tests/data/volvox_formatted_names_limited/.htaccess
  • A tests/data/volvox_formatted_names_limited/names/01f/3.json
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  • A tests/data/volvox_formatted_names_limited/names/meta.json
  • A tests/data/volvox_formatted_names_limited/seq/refSeqs.json
  • A tests/data/volvox_formatted_names_limited/trackList.json
  • A tests/data/volvox_formatted_names_limited/tracks.conf
  • A tests/data/volvox_formatted_names_limited/tracks/Alignments/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/CDS/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/Clones/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/EST/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/ExampleFeatures/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/ExampleFeatures/ctgB/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/Genes/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/Motifs/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/NameTest/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/ReadingFrame/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/Transcript/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/snps/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/volvox.sort.gff3.gz.1
  • A tests/js_tests/spec/GBrowseParseTestIncluded.conf
  • A tests/perl_tests/configuration_manager.t
  • M release-notes.txt
  • M src/perl5/GenomeDB.pm
  • M tests/data/volvox_formatted_names/names/00e/5.json
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  • M tests/data/volvox_formatted_names/names/meta.json
  • M tests/js_tests/spec/GBrowseParseTestBasic.conf
  • M tests/perl_tests/generate-names-incremental.pl.t
  • M tests/perl_tests/generate-names.pl.t
  • M tests/perl_tests/prepare-refseqs.pl.t
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