Changeset [c95f9b1d24b3c189e574fb6bcada09b95e12c1eb] by Erik Derohanian
December 11th, 2013 @ 01:37 PM
Merge branch 'master' into namerest
https://github.com/GMOD/jbrowse/commit/c95f9b1d24b3c189e574fb6bcada...
Committed by Erik Derohanian
- A docs/tutorial/data_files/volvox-sorted.bam.coverage.bw
- A hierarchical_track_selector.css
- A src/JBrowse/View/StandaloneDatasetList.js
- A src/JBrowse/View/TrackList/Hierarchical.js
- A src/JBrowse/View/TrackList/_TextFilterMixin.js
- M README.md
- M bin/bam-to-json.pl
- M bin/flatfile-to-json.pl
- M compat_121.html
- M docs/tutorial/conf_files/volvox.json
- M docs/tutorial/data_files/volvox-sorted.bam.conf
- M docs/tutorial/data_files/volvox-sorted.bam.coverage.conf
- M docs/tutorial/data_files/volvox.vcf.conf
- M docs/tutorial/data_files/volvox_microarray.bw.conf
- M docs/tutorial/data_files/volvox_sine.bw.conf
- M genome.css
- M index.html
- M jbrowse_conf.json
- M main.css
- M release-notes.txt
- M setup.sh
- M src/JBrowse/Browser.js
- M src/JBrowse/ConfigAdaptor/JB_json_v1.js
- M src/JBrowse/ConfigManager.js
- M src/JBrowse/GenomeView.js
- M src/JBrowse/JBrowse.profile.js
- M src/JBrowse/Model/FileBlob.js
- M src/JBrowse/Store/SeqFeature/NCList_v0.js
- M src/JBrowse/Store/TrackMetaData.js
- M src/JBrowse/Util.js
- M src/JBrowse/Util/TextIterator.js
- M src/JBrowse/View/DetailsMixin.js
- M src/JBrowse/View/FileDialog/TrackList.js
- M src/JBrowse/View/Track/Alignments2.js
- M src/JBrowse/View/Track/CanvasFeatures.js
- M src/JBrowse/View/Track/HTMLFeatures.js
- M src/JBrowse/View/Track/_YScaleMixin.js
- M src/JBrowse/View/TrackList/Simple.js
- M src/JBrowse/main.js
- M src/perl5/Bio/JBrowse/Cmd/FlatFileToJson.pm
- M src/perl5/Bio/JBrowse/Cmd/FormatSequences.pm
- M src/perl5/Bio/JBrowse/Cmd/IndexNames.pm
- M src/perl5/Bio/JBrowse/Cmd/IndexNames/BackCompat.pm
- M src/perl5/Bio/JBrowse/Cmd/NCFormatter.pm
- M src/perl5/Bio/JBrowse/HashStore.pm
- M src/perl5/JsonFileStorage.pm
- M tests/data/volvox_formatted_1_2_1/trackInfo.js
- M tests/data/volvox_formatted_refseqs/trackList.json
- M tests/js_tests/spec/ConfigManager.spec.js
- M tests/js_tests/spec/TabixIndex.spec.js
- M tests/js_tests/spec/TabixIndexedFile.spec.js
- M tests/perl_tests/biodb-to-json.pl.t
- M tests/perl_tests/flatfile-to-json.pl.t
- M tests/perl_tests/wig-to-json.pl.t
- M tests/selenium_tests/jbrowse_selenium/JBrowseTest.py
- M tests/selenium_tests/jbrowse_selenium/track_selectors.py
- M tests/selenium_tests/volvox_biodb_test.py
- M tests/selenium_tests/yeast_biodb_test.py
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