Jbrowse JBrowse

NeatFeatures is a JBrowse plugin that enhances gene features in an out-of-band fashion.
- Intended to operate on features drawn by HTMLFeatures - draws intron hats when there is a gap between subfeatures. - applies inverted hat - applies gradient 'pipe' effect to CDS and exons. (by keying on class attribute 'CDS' and 'exon') - It also redraws UTRs as an outline box.

Install: Put the entire NeatFeatures dir into the Jbrowse plugin dir.
Activate: add NeatFeatures into config file under Plugins.

IMPORTANT NOTE: use updated View/Track/HTMLFeatures.js (dated 8/28/2015 - resolves a bug)

Caveats:
- needs more testing. - works with Chrome; probably needs to be tuned for FF and Safari

Extend later:
- config option to disable per track or disable certain aspects globally. https://github.com/GMOD/jbrowse/commit/d5cc6d6f5a646b39851cdb5897e0...