Changeset [e34ab06ccbd543a4ad9344440d91c0d5ae2f7af5] by Robert Buels

March 27th, 2018 @ 12:11 AM

filter reference sequences out of name indexing, cause we index them separately
https://github.com/GMOD/jbrowse/commit/e34ab06ccbd543a4ad9344440d91...

Committed by Robert Buels

  • M src/perl5/Bio/JBrowse/Cmd/IndexNames.pm
  • M tests/data/volvox_formatted_names/names/00e/5.json
  • M tests/data/volvox_formatted_names/names/033/e.json
  • M tests/data/volvox_formatted_names/names/03c/5.json
  • M tests/data/volvox_formatted_names/names/046/c.json
  • M tests/data/volvox_formatted_names/names/05d/f.json
  • M tests/data/volvox_formatted_names/names/06c/a.json
  • M tests/data/volvox_formatted_names/names/072/7.json
  • M tests/data/volvox_formatted_names/names/072/f.json
  • M tests/data/volvox_formatted_names/names/07a/b.json
  • M tests/data/volvox_formatted_names/names/07f/6.json
  • M tests/data/volvox_formatted_names/names/082/4.json
  • M tests/data/volvox_formatted_names/names/096/d.json
  • M tests/data/volvox_formatted_names/names/09f/3.json
  • M tests/data/volvox_formatted_names/names/0f0/c.json
  • M tests/data/volvox_formatted_names/names/103/2.json
  • M tests/data/volvox_formatted_names/names/11e/e.json
  • M tests/data/volvox_formatted_names/names/128/a.json
  • M tests/data/volvox_formatted_names/names/137/a.json
  • M tests/data/volvox_formatted_names/names/149/2.json
  • M tests/data/volvox_formatted_names/names/14f/c.json
  • M tests/data/volvox_formatted_names/names/15b/0.json
  • M tests/data/volvox_formatted_names/names/19e/8.json
  • M tests/data/volvox_formatted_names/names/1a3/4.json
  • M tests/data/volvox_formatted_names/names/1b7/6.json
  • M tests/data/volvox_formatted_names/names/1be/0.json
  • M tests/data/volvox_formatted_names/names/1c7/e.json
  • M tests/data/volvox_formatted_names/names/1cc/a.json
  • M tests/data/volvox_formatted_names/names/1e9/9.json
  • M tests/data/volvox_formatted_names/names/1ed/8.json
  • M tests/data/volvox_formatted_names/names/225/e.json
  • M tests/data/volvox_formatted_names/names/24f/f.json
  • M tests/data/volvox_formatted_names/names/25b/5.json
  • M tests/data/volvox_formatted_names/names/262/f.json
  • M tests/data/volvox_formatted_names/names/265/5.json
  • M tests/data/volvox_formatted_names/names/26f/b.json
  • M tests/data/volvox_formatted_names/names/290/d.json
  • M tests/data/volvox_formatted_names/names/29e/2.json
  • M tests/data/volvox_formatted_names/names/2a6/b.json
  • M tests/data/volvox_formatted_names/names/2af/d.json
  • M tests/data/volvox_formatted_names/names/2be/0.json
  • M tests/data/volvox_formatted_names/names/2d2/5.json
  • M tests/data/volvox_formatted_names/names/2de/2.json
  • M tests/data/volvox_formatted_names/names/304/0.json
  • M tests/data/volvox_formatted_names/names/305/6.json
  • M tests/data/volvox_formatted_names/names/384/d.json
  • M tests/data/volvox_formatted_names/names/38b/2.json
  • M tests/data/volvox_formatted_names/names/3f4/6.json
  • M tests/data/volvox_formatted_names/names/3f9/a.json
  • M tests/data/volvox_formatted_names/names/42f/0.json
  • M tests/data/volvox_formatted_names/names/432/7.json
  • M tests/data/volvox_formatted_names/names/457/c.json
  • M tests/data/volvox_formatted_names/names/47e/0.json
  • M tests/data/volvox_formatted_names/names/4d1/b.json
  • M tests/data/volvox_formatted_names/names/4f2/3.json
  • M tests/data/volvox_formatted_names/names/4f5/9.json
  • M tests/data/volvox_formatted_names/names/504/2.json
  • M tests/data/volvox_formatted_names/names/508/8.json
  • M tests/data/volvox_formatted_names/names/515/1.json
  • M tests/data/volvox_formatted_names/names/517/9.json
  • M tests/data/volvox_formatted_names/names/51a/6.json
  • M tests/data/volvox_formatted_names/names/52f/8.json
  • M tests/data/volvox_formatted_names/names/532/b.json
  • M tests/data/volvox_formatted_names/names/54a/f.json
  • M tests/data/volvox_formatted_names/names/577/0.json
  • M tests/data/volvox_formatted_names/names/59f/8.json
  • M tests/data/volvox_formatted_names/names/5b3/3.json
  • M tests/data/volvox_formatted_names/names/5b6/c.json
  • M tests/data/volvox_formatted_names/names/5c7/e.json
  • M tests/data/volvox_formatted_names/names/5e1/2.json
  • M tests/data/volvox_formatted_names/names/640/2.json
  • M tests/data/volvox_formatted_names/names/64b/0.json
  • M tests/data/volvox_formatted_names/names/65e/e.json
  • M tests/data/volvox_formatted_names/names/668/a.json
  • M tests/data/volvox_formatted_names/names/675/e.json
  • M tests/data/volvox_formatted_names/names/690/8.json
  • M tests/data/volvox_formatted_names/names/696/e.json
  • M tests/data/volvox_formatted_names/names/6b5/2.json
  • M tests/data/volvox_formatted_names/names/6eb/9.json
  • M tests/data/volvox_formatted_names/names/70c/f.json
  • M tests/data/volvox_formatted_names/names/710/9.json
  • M tests/data/volvox_formatted_names/names/717/8.json
  • M tests/data/volvox_formatted_names/names/726/6.json
  • M tests/data/volvox_formatted_names/names/731/2.json
  • M tests/data/volvox_formatted_names/names/73a/f.json
  • M tests/data/volvox_formatted_names/names/73b/1.json
  • M tests/data/volvox_formatted_names/names/740/7.json
  • M tests/data/volvox_formatted_names/names/743/d.json
  • M tests/data/volvox_formatted_names/names/74e/f.json
  • M tests/data/volvox_formatted_names/names/780/5.json
  • M tests/data/volvox_formatted_names/names/78c/4.json
  • M tests/data/volvox_formatted_names/names/79a/8.json
  • M tests/data/volvox_formatted_names/names/79c/3.json
  • M tests/data/volvox_formatted_names/names/7a5/a.json
  • M tests/data/volvox_formatted_names/names/7b4/b.json
  • M tests/data/volvox_formatted_names/names/7e0/a.json
  • M tests/data/volvox_formatted_names/names/7ea/1.json
  • M tests/data/volvox_formatted_names/names/7fc/3.json
  • M tests/data/volvox_formatted_names/names/815/f.json
  • M tests/data/volvox_formatted_names/names/847/f.json
  • M tests/data/volvox_formatted_names/names/85f/4.json
  • M tests/data/volvox_formatted_names/names/86e/9.json
  • M tests/data/volvox_formatted_names/names/877/8.json
  • M tests/data/volvox_formatted_names/names/87b/4.json
  • M tests/data/volvox_formatted_names/names/895/9.json
  • M tests/data/volvox_formatted_names/names/8b2/2.json
  • M tests/data/volvox_formatted_names/names/8b4/f.json
  • M tests/data/volvox_formatted_names/names/8ca/f.json
  • M tests/data/volvox_formatted_names/names/8cb/6.json
  • M tests/data/volvox_formatted_names/names/8d0/f.json
  • M tests/data/volvox_formatted_names/names/8f1/0.json
  • M tests/data/volvox_formatted_names/names/903/d.json
  • M tests/data/volvox_formatted_names/names/909/3.json
  • M tests/data/volvox_formatted_names/names/90b/6.json
  • M tests/data/volvox_formatted_names/names/949/1.json
  • M tests/data/volvox_formatted_names/names/96b/3.json
  • M tests/data/volvox_formatted_names/names/994/c.json
  • M tests/data/volvox_formatted_names/names/9c5/0.json
  • M tests/data/volvox_formatted_names/names/9c5/c.json
  • M tests/data/volvox_formatted_names/names/9d8/7.json
  • M tests/data/volvox_formatted_names/names/9df/1.json
  • M tests/data/volvox_formatted_names/names/9e1/e.json
  • M tests/data/volvox_formatted_names/names/9eb/1.json
  • M tests/data/volvox_formatted_names/names/9fb/b.json
  • M tests/data/volvox_formatted_names/names/a04/4.json
  • M tests/data/volvox_formatted_names/names/a09/8.json
  • M tests/data/volvox_formatted_names/names/a12/d.json
  • M tests/data/volvox_formatted_names/names/a31/9.json
  • M tests/data/volvox_formatted_names/names/a3c/0.json
  • M tests/data/volvox_formatted_names/names/a63/4.json
  • M tests/data/volvox_formatted_names/names/a71/a.json
  • M tests/data/volvox_formatted_names/names/ab5/f.json
  • M tests/data/volvox_formatted_names/names/ad1/1.json
  • M tests/data/volvox_formatted_names/names/ad1/d.json
  • M tests/data/volvox_formatted_names/names/ad5/5.json
  • M tests/data/volvox_formatted_names/names/ad6/d.json
  • M tests/data/volvox_formatted_names/names/ad7/7.json
  • M tests/data/volvox_formatted_names/names/aec/4.json
  • M tests/data/volvox_formatted_names/names/b01/e.json
  • M tests/data/volvox_formatted_names/names/b12/2.json
  • M tests/data/volvox_formatted_names/names/b39/5.json
  • M tests/data/volvox_formatted_names/names/b7a/8.json
  • M tests/data/volvox_formatted_names/names/ba6/9.json
  • M tests/data/volvox_formatted_names/names/bd6/d.json
  • M tests/data/volvox_formatted_names/names/bdd/1.json
  • M tests/data/volvox_formatted_names/names/be4/3.json
  • M tests/data/volvox_formatted_names/names/be9/e.json
  • M tests/data/volvox_formatted_names/names/bf0/1.json
  • M tests/data/volvox_formatted_names/names/c17/1.json
  • M tests/data/volvox_formatted_names/names/c38/1.json
  • M tests/data/volvox_formatted_names/names/c3b/f.json
  • M tests/data/volvox_formatted_names/names/c43/6.json
  • M tests/data/volvox_formatted_names/names/c46/b.json
  • M tests/data/volvox_formatted_names/names/c71/1.json
  • M tests/data/volvox_formatted_names/names/ccb/9.json
  • M tests/data/volvox_formatted_names/names/cd0/c.json
  • M tests/data/volvox_formatted_names/names/cdc/f.json
  • M tests/data/volvox_formatted_names/names/ce6/7.json
  • M tests/data/volvox_formatted_names/names/d03/a.json
  • M tests/data/volvox_formatted_names/names/d05/0.json
  • M tests/data/volvox_formatted_names/names/d25/4.json
  • M tests/data/volvox_formatted_names/names/d39/4.json
  • M tests/data/volvox_formatted_names/names/d68/4.json
  • M tests/data/volvox_formatted_names/names/d70/a.json
  • M tests/data/volvox_formatted_names/names/d75/3.json
  • M tests/data/volvox_formatted_names/names/dbc/d.json
  • M tests/data/volvox_formatted_names/names/dcc/d.json
  • M tests/data/volvox_formatted_names/names/dd1/a.json
  • M tests/data/volvox_formatted_names/names/ddc/3.json
  • M tests/data/volvox_formatted_names/names/df6/f.json
  • M tests/data/volvox_formatted_names/names/e07/3.json
  • M tests/data/volvox_formatted_names/names/e0e/d.json
  • M tests/data/volvox_formatted_names/names/e14/e.json
  • M tests/data/volvox_formatted_names/names/e1b/2.json
  • M tests/data/volvox_formatted_names/names/e24/2.json
  • M tests/data/volvox_formatted_names/names/e25/3.json
  • M tests/data/volvox_formatted_names/names/e3f/f.json
  • M tests/data/volvox_formatted_names/names/e7c/5.json
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  • M tests/data/volvox_formatted_names/names/e8e/6.json
  • M tests/data/volvox_formatted_names/names/e9c/2.json
  • M tests/data/volvox_formatted_names/names/eb8/f.json
  • M tests/data/volvox_formatted_names/names/eba/d.json
  • M tests/data/volvox_formatted_names/names/ebd/3.json
  • M tests/data/volvox_formatted_names/names/ed5/5.json
  • M tests/data/volvox_formatted_names/names/ee1/5.json
  • M tests/data/volvox_formatted_names/names/ee7/2.json
  • M tests/data/volvox_formatted_names/names/eed/3.json
  • M tests/data/volvox_formatted_names/names/ef2/4.json
  • M tests/data/volvox_formatted_names/names/f07/3.json
  • M tests/data/volvox_formatted_names/names/f15/6.json
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  • M tests/data/volvox_formatted_names/names/f26/8.json
  • M tests/data/volvox_formatted_names/names/f30/7.json
  • M tests/data/volvox_formatted_names/names/f32/9.json
  • M tests/data/volvox_formatted_names/names/f4a/2.json
  • M tests/data/volvox_formatted_names/names/f4d/1.json
  • M tests/data/volvox_formatted_names/names/f57/7.json
  • M tests/data/volvox_formatted_names/names/f78/7.json
  • M tests/data/volvox_formatted_names/names/f85/6.json
  • M tests/data/volvox_formatted_names/names/fa3/b.json
  • M tests/data/volvox_formatted_names/names/fa9/a.json
  • M tests/data/volvox_formatted_names/names/faa/9.json
  • M tests/data/volvox_formatted_names/names/fae/4.json
  • M tests/data/volvox_formatted_names/names/fb0/b.json
  • M tests/data/volvox_formatted_names/names/fb6/8.json
  • M tests/data/volvox_formatted_names/names/fc9/9.json
  • M tests/data/volvox_formatted_names/names/fcc/d.json
  • M tests/data/volvox_formatted_names/names/fcd/7.json
  • M tests/data/volvox_formatted_names/names/fd7/c.json
  • M tests/data/volvox_formatted_names/names/ff9/d.json
  • M tests/data/volvox_formatted_names/names/meta.json
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