Changeset [eebacea01205971c19a374cbcf2cc1c00744d195] by Robert Buels
January 3rd, 2013 @ 11:04 AM
change names.json files to names.txt files, which are a hybrid
line-based/JSON format: one JSON array per line. this makes it easy
to incrementally parse the names.txt files, which greatly reduces
the memory footprint of generate-names.pl.
https://github.com/GMOD/jbrowse/commit/eebacea01205971c19a374cbcf2c...
Committed by Robert Buels
- A tests/data/hg19_formatted/tracks/knownGene/chr1/names.txt
- A tests/data/volvox_formatted_names/tracks/Alignments/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/CDS/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/Clones/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/EST/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/ExampleFeatures/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/ExampleFeatures/ctgB/names.txt
- A tests/data/volvox_formatted_names/tracks/Genes/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/Motifs/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/NameTest/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/ReadingFrame/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/Transcript/ctgA/names.txt
- A tests/data/volvox_formatted_names/tracks/snps/ctgA/names.txt
- R tests/data/hg19_formatted/tracks/knownGene/chr1/names.json
- R tests/data/volvox_formatted_names/tracks/Alignments/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/CDS/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/Clones/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/EST/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/ExampleFeatures/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/ExampleFeatures/ctgB/names.json
- R tests/data/volvox_formatted_names/tracks/Genes/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/Motifs/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/NameTest/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/ReadingFrame/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/Transcript/ctgA/names.json
- R tests/data/volvox_formatted_names/tracks/snps/ctgA/names.json
- M bin/generate-names.pl
- M src/perl5/NameHandler.pm
- M tests/perl_tests/biodb-to-json.pl.t
- M tests/perl_tests/flatfile-to-json.pl.t
Create new ticket
Create your profile
Help contribute to this project by taking a few moments to create your personal profile. Create your profile ยป
AJAX Genome Browser