Changeset [f1a791a2c2a2ee538f40ce09b21d9113365c8fe8] by Robert Buels

May 2nd, 2018 @ 12:01 AM

Committed by Robert Buels

  • A src/JBrowse/Model/TribbleIndex.js
  • A src/JBrowse/Store/SeqFeature/VCF/LazyFeature.js
  • A src/JBrowse/Store/SeqFeature/VCF/Parser.js
  • A src/JBrowse/Store/SeqFeature/VCFTribble.js
  • A src/JBrowse/Store/TribbleIndexedFile.js
  • A src/JBrowse/View/FileDialog/TrackList/VCFTribbleDriver.js
  • A src/perl5/Bio/JBrowse/ConfigurationManager.pm
  • A tests/data/1801160099-N32519_26611_S51_56704.hard-filtered.vcf
  • A tests/data/1801160099-N32519_26611_S51_56704.hard-filtered.vcf.idx
  • A tests/data/conf/tracks.conf
  • A tests/data/volvox_formatted_names_incremental/.htaccess
  • A tests/data/volvox_formatted_names_incremental/names/007/e.json
  • A tests/data/volvox_formatted_names_incremental/names/00e/5.json
  • A tests/data/volvox_formatted_names_incremental/names/01f/3.json
  • A tests/data/volvox_formatted_names_incremental/names/02e/9.json
  • A tests/data/volvox_formatted_names_incremental/names/033/e.json
  • A tests/data/volvox_formatted_names_incremental/names/03c/5.json
  • A tests/data/volvox_formatted_names_incremental/names/046/c.json
  • A tests/data/volvox_formatted_names_incremental/names/05d/f.json
  • A tests/data/volvox_formatted_names_incremental/names/062/1.json
  • A tests/data/volvox_formatted_names_incremental/names/06c/a.json
  • A tests/data/volvox_formatted_names_incremental/names/06e/7.json
  • A tests/data/volvox_formatted_names_incremental/names/072/7.json
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  • A tests/data/volvox_formatted_names_incremental/names/07a/b.json
  • A tests/data/volvox_formatted_names_incremental/names/07f/6.json
  • A tests/data/volvox_formatted_names_incremental/names/082/4.json
  • A tests/data/volvox_formatted_names_incremental/names/084/2.json
  • A tests/data/volvox_formatted_names_incremental/names/096/d.json
  • A tests/data/volvox_formatted_names_incremental/names/09f/3.json
  • A tests/data/volvox_formatted_names_incremental/names/0cb/a.json
  • A tests/data/volvox_formatted_names_incremental/names/0e5/d.json
  • A tests/data/volvox_formatted_names_incremental/names/0f0/c.json
  • A tests/data/volvox_formatted_names_incremental/names/0f6/e.json
  • A tests/data/volvox_formatted_names_incremental/names/0fd/2.json
  • A tests/data/volvox_formatted_names_incremental/names/103/2.json
  • A tests/data/volvox_formatted_names_incremental/names/106/d.json
  • A tests/data/volvox_formatted_names_incremental/names/11e/e.json
  • A tests/data/volvox_formatted_names_incremental/names/128/a.json
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  • A tests/data/volvox_formatted_names_incremental/names/149/2.json
  • A tests/data/volvox_formatted_names_incremental/names/14f/c.json
  • A tests/data/volvox_formatted_names_incremental/names/150/3.json
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  • A tests/data/volvox_formatted_names_incremental/names/164/7.json
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  • A tests/data/volvox_formatted_names_incremental/names/1a3/4.json
  • A tests/data/volvox_formatted_names_incremental/names/1ae/d.json
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  • A tests/data/volvox_formatted_names_incremental/names/1e9/9.json
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  • A tests/data/volvox_formatted_names_incremental/names/220/b.json
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  • A tests/data/volvox_formatted_names_incremental/names/24f/f.json
  • A tests/data/volvox_formatted_names_incremental/names/25b/5.json
  • A tests/data/volvox_formatted_names_incremental/names/262/f.json
  • A tests/data/volvox_formatted_names_incremental/names/265/5.json
  • A tests/data/volvox_formatted_names_incremental/names/26a/5.json
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  • A tests/data/volvox_formatted_names_incremental/names/285/c.json
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  • A tests/data/volvox_formatted_names_incremental/names/372/b.json
  • A tests/data/volvox_formatted_names_incremental/names/376/0.json
  • A tests/data/volvox_formatted_names_incremental/names/37b/9.json
  • A tests/data/volvox_formatted_names_incremental/names/384/d.json
  • A tests/data/volvox_formatted_names_incremental/names/38b/0.json
  • A tests/data/volvox_formatted_names_incremental/names/38b/2.json
  • A tests/data/volvox_formatted_names_incremental/names/38d/4.json
  • A tests/data/volvox_formatted_names_incremental/names/392/5.json
  • A tests/data/volvox_formatted_names_incremental/names/396/5.json
  • A tests/data/volvox_formatted_names_incremental/names/39f/b.json
  • A tests/data/volvox_formatted_names_incremental/names/3bd/4.json
  • A tests/data/volvox_formatted_names_incremental/names/3e5/6.json
  • A tests/data/volvox_formatted_names_incremental/names/3e6/5.json
  • A tests/data/volvox_formatted_names_incremental/names/3f4/6.json
  • A tests/data/volvox_formatted_names_incremental/names/3f9/a.json
  • A tests/data/volvox_formatted_names_incremental/names/42f/0.json
  • A tests/data/volvox_formatted_names_incremental/names/430/7.json
  • A tests/data/volvox_formatted_names_incremental/names/432/7.json
  • A tests/data/volvox_formatted_names_incremental/names/449/1.json
  • A tests/data/volvox_formatted_names_incremental/names/454/6.json
  • A tests/data/volvox_formatted_names_incremental/names/457/c.json
  • A tests/data/volvox_formatted_names_incremental/names/463/7.json
  • A tests/data/volvox_formatted_names_incremental/names/47e/0.json
  • A tests/data/volvox_formatted_names_incremental/names/480/6.json
  • A tests/data/volvox_formatted_names_incremental/names/49a/8.json
  • A tests/data/volvox_formatted_names_incremental/names/49a/b.json
  • A tests/data/volvox_formatted_names_incremental/names/4d1/b.json
  • A tests/data/volvox_formatted_names_incremental/names/4f1/7.json
  • A tests/data/volvox_formatted_names_incremental/names/4f2/3.json
  • A tests/data/volvox_formatted_names_incremental/names/4f5/9.json
  • A tests/data/volvox_formatted_names_incremental/names/4fb/4.json
  • A tests/data/volvox_formatted_names_incremental/names/504/2.json
  • A tests/data/volvox_formatted_names_incremental/names/508/8.json
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  • A tests/data/volvox_formatted_names_incremental/names/515/1.json
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  • A tests/data/volvox_formatted_names_incremental/names/52f/8.json
  • A tests/data/volvox_formatted_names_incremental/names/532/6.json
  • A tests/data/volvox_formatted_names_incremental/names/532/b.json
  • A tests/data/volvox_formatted_names_incremental/names/54a/f.json
  • A tests/data/volvox_formatted_names_incremental/names/54c/4.json
  • A tests/data/volvox_formatted_names_incremental/names/561/c.json
  • A tests/data/volvox_formatted_names_incremental/names/564/c.json
  • A tests/data/volvox_formatted_names_incremental/names/575/d.json
  • A tests/data/volvox_formatted_names_incremental/names/577/0.json
  • A tests/data/volvox_formatted_names_incremental/names/584/9.json
  • A tests/data/volvox_formatted_names_incremental/names/599/e.json
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  • A tests/data/volvox_formatted_names_incremental/names/5b3/3.json
  • A tests/data/volvox_formatted_names_incremental/names/5b6/c.json
  • A tests/data/volvox_formatted_names_incremental/names/5c7/e.json
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  • A tests/data/volvox_formatted_names_incremental/seq/refSeqs.json
  • A tests/data/volvox_formatted_names_incremental/trackList.json
  • A tests/data/volvox_formatted_names_incremental/tracks.conf
  • A tests/data/volvox_formatted_names_incremental/tracks/Alignments/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/CDS/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/Clones/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/EST/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/ExampleFeatures/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/ExampleFeatures/ctgB/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/Genes/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/Motifs/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/NameTest/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/ReadingFrame/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/Transcript/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/tracks/snps/ctgA/names.txt
  • A tests/data/volvox_formatted_names_incremental/volvox.sort.gff3.gz.1
  • A tests/data/volvox_formatted_names_limited/.htaccess
  • A tests/data/volvox_formatted_names_limited/names/01f/3.json
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  • A tests/data/volvox_formatted_names_limited/names/meta.json
  • A tests/data/volvox_formatted_names_limited/seq/refSeqs.json
  • A tests/data/volvox_formatted_names_limited/trackList.json
  • A tests/data/volvox_formatted_names_limited/tracks.conf
  • A tests/data/volvox_formatted_names_limited/tracks/Alignments/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/CDS/ctgA/names.txt
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  • A tests/data/volvox_formatted_names_limited/tracks/ExampleFeatures/ctgB/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/Genes/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/Motifs/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/NameTest/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/ReadingFrame/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/Transcript/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/tracks/snps/ctgA/names.txt
  • A tests/data/volvox_formatted_names_limited/volvox.sort.gff3.gz.1
  • A tests/js_tests/spec/GBrowseParseTestIncluded.conf
  • A tests/js_tests/spec/TribbleIndexedFile.spec.js
  • A tests/perl_tests/configuration_manager.t
  • R src/JBrowse/Store/SeqFeature/VCFTabix/LazyFeature.js
  • R src/JBrowse/Store/SeqFeature/VCFTabix/Parser.js
  • M css/menubar.scss
  • M package.json
  • M plugins/DebugEvents/js/main.js
  • M release-notes.txt
  • M src/JBrowse/Browser.js
  • M src/JBrowse/GenomeView.js
  • M src/JBrowse/Store/SeqFeature/VCFTabix.js
  • M src/JBrowse/View/FileDialog.js
  • M src/JBrowse/View/FileDialog/ResourceList.js
  • M src/JBrowse/View/FileDialog/TrackList/_IndexedFileDriver.js
  • M src/JBrowse/View/Track/BlockBased.js
  • M src/JBrowse/View/Track/Combination.js
  • M src/perl5/GenomeDB.pm
  • M tests/data/volvox_formatted_names/names/00e/5.json
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  • M tests/perl_tests/generate-names.pl.t
  • M tests/perl_tests/prepare-refseqs.pl.t
  • M webpack.config.js
  • M yarn.lock
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