Changeset [f2c666d7d3dc06669e94da834c89e34285aa5ce1] by Robert Buels
December 18th, 2013 @ 11:10 AM
Merge branch 'master' into namerest
https://github.com/GMOD/jbrowse/commit/f2c666d7d3dc06669e94da834c89...
Committed by Robert Buels
- A bin/json2conf.pl
- A docs/tutorial/data_files/functions.conf
- A jbrowse.conf
- A tests/js_tests/spec/VCF.spec.js
- A tests/selenium_tests/jasmine_test.py
- M bin/flatfile-to-json.pl
- M bin/wig-to-json.pl
- M build/Makefile
- M docs/docs.css
- M docs/tutorial/conf_files/volvox.json
- M docs/tutorial/data_files/volvox-sorted.bam.conf
- M docs/tutorial/data_files/volvox-sorted.bam.coverage.conf
- M docs/tutorial/data_files/volvox.gff3.conf
- M docs/tutorial/data_files/volvox.vcf.conf
- M docs/tutorial/data_files/volvox_fromconfig.conf
- M docs/tutorial/data_files/volvox_microarray.bw.conf
- M docs/tutorial/data_files/volvox_sine.bw.conf
- M docs/tutorial/index.html
- M index.html
- M jbrowse_conf.json
- M main.css
- M plugins/RegexSequenceSearch/js/main.js
- M release-notes.txt
- M setup.sh
- M src/JBrowse/Browser.js
- M src/JBrowse/ConfigAdaptor/JB_json_v1.js
- M src/JBrowse/ConfigAdaptor/conf.js
- M src/JBrowse/ConfigManager.js
- M src/JBrowse/Model/DataView.js
- M src/JBrowse/Model/TabixIndex.js
- M src/JBrowse/Store/Hash.js
- M src/JBrowse/Store/SeqFeature/FromConfig.js
- M src/JBrowse/Store/SeqFeature/GFF3.js
- M src/JBrowse/Store/SeqFeature/NCList.js
- M src/JBrowse/Store/SeqFeature/VCFTabix.js
- M src/JBrowse/Store/TabixIndexedFile.js
- M src/JBrowse/Util.js
- M src/JBrowse/View/DetailsMixin.js
- M src/JBrowse/View/FASTA.js
- M src/JBrowse/View/InfoDialog.js
- M src/JBrowse/View/Track/CanvasFeatures.js
- M src/JBrowse/View/Track/_FeatureDetailMixin.js
- M src/JBrowse/View/Track/_VariantDetailMixin.js
- M src/JBrowse/View/TrackList/Hierarchical.js
- M src/JBrowse/main.js
- M src/perl5/Bio/JBrowse/Cmd/BioDBToJson.pm
- M src/perl5/Bio/JBrowse/Cmd/FlatFileToJson.pm
- M src/perl5/Bio/JBrowse/Cmd/FormatSequences.pm
- M src/perl5/Bio/JBrowse/Cmd/IndexNames.pm
- M src/perl5/Bio/JBrowse/Cmd/NCFormatter.pm
- M src/perl5/Bio/JBrowse/FeatureStream.pm
- M src/perl5/GenomeDB.pm
- M src/perl5/JsonFileStorage.pm
- M tests/js_tests/index.html
- M tests/js_tests/spec/GBrowseParseTestBasic.conf
- M tests/js_tests/spec/GBrowseParser.spec.js
- M tests/js_tests/spec/GFF3.spec.js
- M tests/selenium_tests/embedded_mode_test.py
- M tests/selenium_tests/jbrowse_selenium/JBrowseTest.py
- M tests/selenium_tests/volvox_biodb_test.py
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