Changeset [ff5934d8d5a884e256796ed6f5a06cf743ed4f34] by Robert Buels
January 9th, 2013 @ 12:34 PM
make the number of bits used for hashing variable, and make
caching smarter during name index generation. working on getting
generate-names.pl performance more acceptable
https://github.com/GMOD/jbrowse/commit/ff5934d8d5a884e256796ed6f5a0...
Committed by Robert Buels
- A tests/data/volvox_formatted_names/names/0.json
- A tests/data/volvox_formatted_names/names/1.json
- A tests/data/volvox_formatted_names/names/2.json
- A tests/data/volvox_formatted_names/names/3.json
- A tests/data/volvox_formatted_names/names/4.json
- A tests/data/volvox_formatted_names/names/5.json
- A tests/data/volvox_formatted_names/names/6.json
- A tests/data/volvox_formatted_names/names/7.json
- A tests/data/volvox_formatted_names/names/8.json
- A tests/data/volvox_formatted_names/names/9.json
- A tests/data/volvox_formatted_names/names/a.json
- A tests/data/volvox_formatted_names/names/b.json
- A tests/data/volvox_formatted_names/names/c.json
- A tests/data/volvox_formatted_names/names/d.json
- A tests/data/volvox_formatted_names/names/e.json
- A tests/data/volvox_formatted_names/names/f.json
- A tests/data/volvox_formatted_names/names/meta.json
- R tests/data/volvox_formatted_names/names/005/9d7/0a
- R tests/data/volvox_formatted_names/names/00b/ecf/66
- R tests/data/volvox_formatted_names/names/01d/41b/76
- R tests/data/volvox_formatted_names/names/061/0f1/bf
- R tests/data/volvox_formatted_names/names/06b/9df/6f
- R tests/data/volvox_formatted_names/names/06c/4d8/94
- R tests/data/volvox_formatted_names/names/082/857/70
- R tests/data/volvox_formatted_names/names/0f0/fca/93
- R tests/data/volvox_formatted_names/names/138/c28/5c
- R tests/data/volvox_formatted_names/names/159/d8c/b6
- R tests/data/volvox_formatted_names/names/1ab/714/69
- R tests/data/volvox_formatted_names/names/1b0/ecf/0b
- R tests/data/volvox_formatted_names/names/1b5/a59/fa
- R tests/data/volvox_formatted_names/names/1ca/88b/22
- R tests/data/volvox_formatted_names/names/1d1/0bf/01
- R tests/data/volvox_formatted_names/names/200/1f4/62
- R tests/data/volvox_formatted_names/names/23a/0de/e4
- R tests/data/volvox_formatted_names/names/23f/5ad/11
- R tests/data/volvox_formatted_names/names/249/869/08
- R tests/data/volvox_formatted_names/names/25a/b7e/0a
- R tests/data/volvox_formatted_names/names/266/484/7f
- R tests/data/volvox_formatted_names/names/26e/7a3/c0
- R tests/data/volvox_formatted_names/names/28c/d86/e9
- R tests/data/volvox_formatted_names/names/29c/c14/fc
- R tests/data/volvox_formatted_names/names/2d5/5e4/62
- R tests/data/volvox_formatted_names/names/2ea/1d0/e5
- R tests/data/volvox_formatted_names/names/2fa/042/f0
- R tests/data/volvox_formatted_names/names/308/5be/9e
- R tests/data/volvox_formatted_names/names/31d/6b7/a8
- R tests/data/volvox_formatted_names/names/31f/91c/7e
- R tests/data/volvox_formatted_names/names/335/8d0/7b
- R tests/data/volvox_formatted_names/names/36b/b73/b1
- R tests/data/volvox_formatted_names/names/37b/ae1/a4
- R tests/data/volvox_formatted_names/names/3ae/e9c/50
- R tests/data/volvox_formatted_names/names/3d8/358/49
- R tests/data/volvox_formatted_names/names/3f0/d3f/9a
- R tests/data/volvox_formatted_names/names/3f2/b07/ab
- R tests/data/volvox_formatted_names/names/3f3/67b/3b
- R tests/data/volvox_formatted_names/names/40b/dd1/32
- R tests/data/volvox_formatted_names/names/41b/c43/27
- R tests/data/volvox_formatted_names/names/445/fe0/ed
- R tests/data/volvox_formatted_names/names/448/8fa/e4
- R tests/data/volvox_formatted_names/names/44b/26b/52
- R tests/data/volvox_formatted_names/names/45e/f00/7e
- R tests/data/volvox_formatted_names/names/47c/c1b/e0
- R tests/data/volvox_formatted_names/names/480/a0f/0c
- R tests/data/volvox_formatted_names/names/48c/b8f/10
- R tests/data/volvox_formatted_names/names/4a0/02d/59
- R tests/data/volvox_formatted_names/names/4b2/6eb/d3
- R tests/data/volvox_formatted_names/names/4be/a74/ef
- R tests/data/volvox_formatted_names/names/4cf/cec/10
- R tests/data/volvox_formatted_names/names/4de/9ac/c6
- R tests/data/volvox_formatted_names/names/539/f59/9e
- R tests/data/volvox_formatted_names/names/53a/7a3/19
- R tests/data/volvox_formatted_names/names/549/6f1/42
- R tests/data/volvox_formatted_names/names/54a/7ee/72
- R tests/data/volvox_formatted_names/names/54f/29d/87
- R tests/data/volvox_formatted_names/names/55f/cfc/d7
- R tests/data/volvox_formatted_names/names/56b/d7a/48
- R tests/data/volvox_formatted_names/names/586/19f/be
- R tests/data/volvox_formatted_names/names/58a/772/66
- R tests/data/volvox_formatted_names/names/59a/6e0/73
- R tests/data/volvox_formatted_names/names/5e1/fdb/94
- R tests/data/volvox_formatted_names/names/5ec/b24/6a
- R tests/data/volvox_formatted_names/names/5fc/ab6/7f
- R tests/data/volvox_formatted_names/names/610/89c/5c
- R tests/data/volvox_formatted_names/names/62a/a64/02
- R tests/data/volvox_formatted_names/names/6bb/4d6/ff
- R tests/data/volvox_formatted_names/names/6c0/9ff/9d
- R tests/data/volvox_formatted_names/names/6cc/27f/ad
- R tests/data/volvox_formatted_names/names/6d3/a39/25
- R tests/data/volvox_formatted_names/names/6db/024/ff
- R tests/data/volvox_formatted_names/names/711/7c1/29
- R tests/data/volvox_formatted_names/names/71b/eef/f9
- R tests/data/volvox_formatted_names/names/76d/32b/e0
- R tests/data/volvox_formatted_names/names/781/3ad/1d
- R tests/data/volvox_formatted_names/names/7d0/7fb/0b
- R tests/data/volvox_formatted_names/names/7ee/db1/6e
- R tests/data/volvox_formatted_names/names/7f2/f67/e6
- R tests/data/volvox_formatted_names/names/820/79e/b1
- R tests/data/volvox_formatted_names/names/83b/de7/2b
- R tests/data/volvox_formatted_names/names/8c1/796/b3
- R tests/data/volvox_formatted_names/names/8d1/4eb/ad
- R tests/data/volvox_formatted_names/names/912/106/ca
- R tests/data/volvox_formatted_names/names/916/b06/e7
- R tests/data/volvox_formatted_names/names/98f/8e1/b2
- R tests/data/volvox_formatted_names/names/9a9/63e/65
- R tests/data/volvox_formatted_names/names/9d1/473/af
- R tests/data/volvox_formatted_names/names/a19/513/7a
- R tests/data/volvox_formatted_names/names/a3e/7cd/ea
- R tests/data/volvox_formatted_names/names/a48/a09/f3
- R tests/data/volvox_formatted_names/names/a80/301/f3
- R tests/data/volvox_formatted_names/names/a8c/515/03
- R tests/data/volvox_formatted_names/names/a8d/fe6/12
- R tests/data/volvox_formatted_names/names/a92/ed0/50
- R tests/data/volvox_formatted_names/names/a97/4da/2f
- R tests/data/volvox_formatted_names/names/a98/cef/24
- R tests/data/volvox_formatted_names/names/a9d/e74/07
- R tests/data/volvox_formatted_names/names/ada/026/a5
- R tests/data/volvox_formatted_names/names/add/1ce/67
- R tests/data/volvox_formatted_names/names/aeb/3b0/1e
- R tests/data/volvox_formatted_names/names/afb/222/0b
- R tests/data/volvox_formatted_names/names/b0c/545/46
- R tests/data/volvox_formatted_names/names/b1a/516/47
- R tests/data/volvox_formatted_names/names/b1c/4d7/53
- R tests/data/volvox_formatted_names/names/b2d/ea3/27
- R tests/data/volvox_formatted_names/names/b75/337/b9
- R tests/data/volvox_formatted_names/names/b77/c7e/a1
- R tests/data/volvox_formatted_names/names/b7a/881/5f
- R tests/data/volvox_formatted_names/names/b92/c51/79
- R tests/data/volvox_formatted_names/names/b97/309/6d
- R tests/data/volvox_formatted_names/names/bd9/138/b2
- R tests/data/volvox_formatted_names/names/c05/407/2f
- R tests/data/volvox_formatted_names/names/c6c/3e7/c5
- R tests/data/volvox_formatted_names/names/c6c/e7e/33
- R tests/data/volvox_formatted_names/names/c71/e0c/ba
- R tests/data/volvox_formatted_names/names/c7c/275/d0
- R tests/data/volvox_formatted_names/names/c8c/493/7b
- R tests/data/volvox_formatted_names/names/c96/e70/cf
- R tests/data/volvox_formatted_names/names/ca9/608/24
- R tests/data/volvox_formatted_names/names/cb2/a51/06
- R tests/data/volvox_formatted_names/names/cb8/030/40
- R tests/data/volvox_formatted_names/names/cbc/6da/fd
- R tests/data/volvox_formatted_names/names/ccf/5ad/6d
- R tests/data/volvox_formatted_names/names/cdc/df1/6f
- R tests/data/volvox_formatted_names/names/ce4/8ea/6b
- R tests/data/volvox_formatted_names/names/ce7/439/fb
- R tests/data/volvox_formatted_names/names/d0e/268/6c
- R tests/data/volvox_formatted_names/names/d0e/d7b/19
- R tests/data/volvox_formatted_names/names/d22/fba/69
- R tests/data/volvox_formatted_names/names/d38/d39/65
- R tests/data/volvox_formatted_names/names/d4e/0fd/7c
- R tests/data/volvox_formatted_names/names/d5f/5bd/aa
- R tests/data/volvox_formatted_names/names/d8b/512/9d
- R tests/data/volvox_formatted_names/names/d9b/480/88
- R tests/data/volvox_formatted_names/names/ded/944/91
- R tests/data/volvox_formatted_names/names/dfd/8d6/84
- R tests/data/volvox_formatted_names/names/e10/1f2/68
- R tests/data/volvox_formatted_names/names/e1c/ad8/39
- R tests/data/volvox_formatted_names/names/e81/e90/93
- R tests/data/volvox_formatted_names/names/e8b/7be/43
- R tests/data/volvox_formatted_names/names/eee/9bc/e2
- R tests/data/volvox_formatted_names/names/efd/a7a/5a
- R tests/data/volvox_formatted_names/names/f47/31a/34
- R tests/data/volvox_formatted_names/names/f6b/088/f3
- M bin/generate-names.pl
- M src/perl5/Bio/JBrowse/HashStore.pm
- M tests/data/volvox_formatted_names/tracks/Alignments/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/CDS/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/Clones/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/EST/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/ExampleFeatures/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/ExampleFeatures/ctgB/names.txt
- M tests/data/volvox_formatted_names/tracks/Genes/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/Motifs/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/NameTest/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/ReadingFrame/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/Transcript/ctgA/names.txt
- M tests/data/volvox_formatted_names/tracks/snps/ctgA/names.txt
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