Changeset [ff5934d8d5a884e256796ed6f5a06cf743ed4f34] by Robert Buels

Revision ff5934d8d5a884e256796ed6f5a06cf743ed4f34, committed by Robert Buels · January 9th, 2013 @ 12:34 PM

make the number of bits used for hashing variable, and make caching smarter during name index generation. working on getting generate-names.pl performance more acceptable
https://github.com/GMOD/jbrowse/commit/ff5934d8d5a884e256796ed6f5a0...

176 changed files

A tests/data/volvox_formatted_names/names/0.json
A tests/data/volvox_formatted_names/names/1.json
A tests/data/volvox_formatted_names/names/2.json
A tests/data/volvox_formatted_names/names/3.json
A tests/data/volvox_formatted_names/names/4.json
A tests/data/volvox_formatted_names/names/5.json
A tests/data/volvox_formatted_names/names/6.json
A tests/data/volvox_formatted_names/names/7.json
A tests/data/volvox_formatted_names/names/8.json
A tests/data/volvox_formatted_names/names/9.json
A tests/data/volvox_formatted_names/names/a.json
A tests/data/volvox_formatted_names/names/b.json
A tests/data/volvox_formatted_names/names/c.json
A tests/data/volvox_formatted_names/names/d.json
A tests/data/volvox_formatted_names/names/e.json
A tests/data/volvox_formatted_names/names/f.json
A tests/data/volvox_formatted_names/names/meta.json
R tests/data/volvox_formatted_names/names/005/9d7/0a
R tests/data/volvox_formatted_names/names/00b/ecf/66
R tests/data/volvox_formatted_names/names/01d/41b/76
R tests/data/volvox_formatted_names/names/061/0f1/bf
R tests/data/volvox_formatted_names/names/06b/9df/6f
R tests/data/volvox_formatted_names/names/06c/4d8/94
R tests/data/volvox_formatted_names/names/082/857/70
R tests/data/volvox_formatted_names/names/0f0/fca/93
R tests/data/volvox_formatted_names/names/138/c28/5c
R tests/data/volvox_formatted_names/names/159/d8c/b6
R tests/data/volvox_formatted_names/names/1ab/714/69
R tests/data/volvox_formatted_names/names/1b0/ecf/0b
R tests/data/volvox_formatted_names/names/1b5/a59/fa
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R tests/data/volvox_formatted_names/names/a8c/515/03
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R tests/data/volvox_formatted_names/names/a98/cef/24
R tests/data/volvox_formatted_names/names/a9d/e74/07
R tests/data/volvox_formatted_names/names/ada/026/a5
R tests/data/volvox_formatted_names/names/add/1ce/67
R tests/data/volvox_formatted_names/names/aeb/3b0/1e
R tests/data/volvox_formatted_names/names/afb/222/0b
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R tests/data/volvox_formatted_names/names/b77/c7e/a1
R tests/data/volvox_formatted_names/names/b7a/881/5f
R tests/data/volvox_formatted_names/names/b92/c51/79
R tests/data/volvox_formatted_names/names/b97/309/6d
R tests/data/volvox_formatted_names/names/bd9/138/b2
R tests/data/volvox_formatted_names/names/c05/407/2f
R tests/data/volvox_formatted_names/names/c6c/3e7/c5
R tests/data/volvox_formatted_names/names/c6c/e7e/33
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R tests/data/volvox_formatted_names/names/c7c/275/d0
R tests/data/volvox_formatted_names/names/c8c/493/7b
R tests/data/volvox_formatted_names/names/c96/e70/cf
R tests/data/volvox_formatted_names/names/ca9/608/24
R tests/data/volvox_formatted_names/names/cb2/a51/06
R tests/data/volvox_formatted_names/names/cb8/030/40
R tests/data/volvox_formatted_names/names/cbc/6da/fd
R tests/data/volvox_formatted_names/names/ccf/5ad/6d
R tests/data/volvox_formatted_names/names/cdc/df1/6f
R tests/data/volvox_formatted_names/names/ce4/8ea/6b
R tests/data/volvox_formatted_names/names/ce7/439/fb
R tests/data/volvox_formatted_names/names/d0e/268/6c
R tests/data/volvox_formatted_names/names/d0e/d7b/19
R tests/data/volvox_formatted_names/names/d22/fba/69
R tests/data/volvox_formatted_names/names/d38/d39/65
R tests/data/volvox_formatted_names/names/d4e/0fd/7c
R tests/data/volvox_formatted_names/names/d5f/5bd/aa
R tests/data/volvox_formatted_names/names/d8b/512/9d
R tests/data/volvox_formatted_names/names/d9b/480/88
R tests/data/volvox_formatted_names/names/ded/944/91
R tests/data/volvox_formatted_names/names/dfd/8d6/84
R tests/data/volvox_formatted_names/names/e10/1f2/68
R tests/data/volvox_formatted_names/names/e1c/ad8/39
R tests/data/volvox_formatted_names/names/e81/e90/93
R tests/data/volvox_formatted_names/names/e8b/7be/43
R tests/data/volvox_formatted_names/names/eee/9bc/e2
R tests/data/volvox_formatted_names/names/efd/a7a/5a
R tests/data/volvox_formatted_names/names/f47/31a/34
R tests/data/volvox_formatted_names/names/f6b/088/f3
M bin/generate-names.pl
M src/perl5/Bio/JBrowse/HashStore.pm
M tests/data/volvox_formatted_names/tracks/Alignments/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/CDS/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/Clones/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/EST/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/ExampleFeatures/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/ExampleFeatures/ctgB/names.txt
M tests/data/volvox_formatted_names/tracks/Genes/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/Motifs/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/NameTest/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/ReadingFrame/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/Transcript/ctgA/names.txt
M tests/data/volvox_formatted_names/tracks/snps/ctgA/names.txt