LoadHelper.pm DESTROY error
Reported by Shahar | December 13th, 2010 @ 01:15 AM
Hi,
I had to change the location of my system tmp dir from a local location to NFS. I then found LoadHelper DESTROY function, which essentially only removes the temporary directory, started giving some errors (can't remove dir since it's not empty), although it seems the temp directory was actually completely removed.
I commented out this single rmtree line and everything seems to work fine. N traces are left in the tempdir. Also, I'm not sure why is this rmtree call needed - doesn't tempdir cleanups after itself?
Shahar
Comments and changes to this ticket
-
JBrowse February 29th, 2012 @ 11:56 AM
- State changed from “new” to “resolved”
(from [bb8ba75850d15eb9ca2ba943003c16e0d7c67293]) fix off-by-one error in bioperl flattener. fixes #73.
@skinner, that looks to me like some attempt to deal with UCSC coordinates. does something someplace else need to be fixed because
of that?
https://github.com/GMOD/jbrowse/commit/bb8ba75850d15eb9ca2ba943003c... -
JBrowse February 29th, 2012 @ 02:56 PM
(from [c0f524785014b539c06ffa5779abf9ac8c696901]) Revert "fix off-by-one error in bioperl flattener. fixes #73."
This reverts commit bb8ba75850d15eb9ca2ba943003c16e0d7c67293.
https://github.com/GMOD/jbrowse/commit/c0f524785014b539c06ffa5779ab...
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Shahar