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LoadHelper.pm DESTROY error

#73

Hi,

I had to change the location of my system tmp dir from a local location to NFS. I then found LoadHelper DESTROY function, which essentially only removes the temporary directory, started giving some errors (can't remove dir since it's not empty), although it seems the temp directory was actually completely removed.

I commented out this single rmtree line and everything seems to work fine. N traces are left in the tempdir. Also, I'm not sure why is this rmtree call needed - doesn't tempdir cleanups after itself?

Shahar

Reported by Shahar · December 13th, 2010 @ 01:15 AM

State: resolved
Milestone: none
Assigned to: nobody

Activity

  1. JBrowse
    JBrowse
    • State changed from new to resolved

    (from [bb8ba75850d15eb9ca2ba943003c16e0d7c67293]) fix off-by-one error in bioperl flattener. fixes #73 LoadHelper.pm DESTROY error.

    @skinner, that looks to me like some attempt to deal with UCSC coordinates. does something someplace else need to be fixed because
    of that?
    https://github.com/GMOD/jbrowse/commit/bb8ba75850d15eb9ca2ba943003c...

    February 29th, 2012 @ 11:56 AM

  2. JBrowse
    JBrowse

    (from [c0f524785014b539c06ffa5779abf9ac8c696901]) Revert "fix off-by-one error in bioperl flattener. fixes #73 LoadHelper.pm DESTROY error."

    This reverts commit bb8ba75850d15eb9ca2ba943003c16e0d7c67293.
    https://github.com/GMOD/jbrowse/commit/c0f524785014b539c06ffa5779ab...

    February 29th, 2012 @ 02:56 PM

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