Alexie Papanicolaou's profile - jbrowse

Lighthouse has a new layout. Prefer the old one? Return to the old layout, and switch back any time from the link at the top of each page.

There was a problem

You must be a member of this account.

Alexie Papanicolaou's latest activity

Saturday, October 02 2010

67 config file: limit features by source; set feature label was updated in JBrowse

Alexie Papanicolaou commented at 6:54 AM

Hello

I've troubleshooted this and it was a stupid mistake from my end (+ some Drupalesque nonsense of escaping -> arrows)

For posterity: To troubleshoot I used...

Tuesday, September 28 2010

27 Documentation of ImageTrack JSON format was updated in JBrowse

Alexie Papanicolaou commented at 5:45 AM
Answering one of my own questions:
click redirect:
```
  "urlTemplate": "http://www.google.com/search?q={name}"
```
where i've seen {name} or {id} being used. from ht...

67 config file: limit features by source; set feature label was created in JBrowse

Alexie Papanicolaou created the ticket at 5:44 AM
Hello

I have 2 small questions. I have this in my config file
```
  "track": "protein_match",
  "key": "BLAST",
  "feature": ["protein_match:TEST"],
    "subfeatur...
```

Sunday, September 26 2010

27 Documentation of ImageTrack JSON format was updated in JBrowse

Alexie Papanicolaou commented at 4:44 PM
I guess it would be better if I wrote what would be cool to have. Attached is how far I got today. The image is a JBrowse of data generated on-the-fly from a Ch...
Alexie Papanicolaou commented at 3:40 AM
p.s. Yes, perldoc provides the arguments needed but it was just first example as I went down the config-desc.html. I'm comparing with GBrowse's documentation (w...
- Milestone order changed from 0 to 0
by Alexie Papanicolaou at 3:27 AM

Hi guys

Almost a year on since this ticket.

Yes, indeed documentation for JBrowse is scarce which is surprising for something published in Genome Res a year ago...

65 div elements and embedding was updated in JBrowse

Alexie Papanicolaou commented at 2:57 PM

Hi Mitch

Thanks for the quick reply. That works! I guess I should go learn some CSS...

a
Alexie Papanicolaou commented at 2:20 AM
That didn't come out, should have read the help/preview (why does every system have their own formatting code...)

works:
@@@ HTML
```
 <div id="GenomeBrowser" styl...
```
Alexie Papanicolaou commented at 2:17 AM
Hello

Sorry, I was not clear.

For example, in the index.html shipped with jbrowse, the following works:
```
<div id="GenomeBrowser" style="height: 100%; width: 10...
```

Saturday, September 25 2010

65 div elements and embedding was created in JBrowse

Alexie Papanicolaou created the ticket at 9:31 AM

Hi guys

I'm new to jbrowse (about 12 h). But I've been trying to understand more about embedding (currently wish to make a Drupal module). Somewhere in the tund...