Overview - JBrowse - jbrowse

improvements to Alignments track deta... was committed by Robert Buels
Wednesday Oct 24

Commit [f3b86086d96ccba1f39e689cbd4b3b3654478f95]
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fix bug with sequence display: the la... was committed by Robert Buels 01:51 PM
Commit [6c98bdfb31b2b8a3fe63324adfb6afd480c6d779]
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take _refID out of the accessible tag... was committed by Robert Buels 01:51 PM
Commit [bf59aade8549466988de4513ccfb9231c9acb041]
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fix bug with sequence display: the la... was committed by Robert Buels 01:49 PM
Commit [7382d9f5bd93ef3fd95ec052b450a7c31cb2589e]
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for multi-segment BAM reads (e.g. mat... was committed by Robert Buels 12:13 PM
Commit [084fde879a297322d2a483f2f51285ed3fcca83c]
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don't die when encountering presumabl... was committed by Robert Buels 12:13 PM
Commit [e7f929795d2a2479cfe6a22a7c89a05c80a0697b]
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highlight BAM alignments with missing... was committed by Robert Buels 11:41 AM
Commit [fc1313e1afa904910d264cb747e45fafdeffcc2d]
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make Alignment track have5 to "alignm... was committed by Robert Buels 11:41 AM
Commit [0b49df5184bbc04efa8efcf2b73a503e2b947ba4]
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tweak loading marker a little more ht... was committed by Robert Buels 08:22 AM
Commit [181d56300400bdba2a88bd4981f2ab524af3cd69]
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add a tooltip to the loading div http... was committed by Robert Buels 08:22 AM
Commit [3a5a16f85bb65cfc8fe20c9e2c8e856d6cd65101]
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add the text size to the title of the... was committed by Robert Buels 08:22 AM
Commit [aa39f37e815a2e1d0a266557b70c2f335e13525f]
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call showVisibleBlocks after updateTr... was committed by Robert Buels 08:22 AM
Commit [b2135cb4eff6084e078b6cf0c696466ee8378dd1]
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make the Loading message a little pre... was committed by Robert Buels 08:22 AM
Commit [285429f8f22d3508f70c19b0979c345265faaf90]
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rewrite BAM feature-reading loop to s... was committed by Robert Buels
Tuesday Oct 23

Commit [6d9e4157d612f2718a4826cf68a2e916a20d7d9a]
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rewrite weird BAM chunk-fetching code... was committed by Robert Buels 03:46 PM
Commit [a2af4cb902056fba0c468309646d1ac1f47063a7]
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reinstate the old two-lines zoomed-ou... was committed by Robert Buels 02:33 PM
Commit [65c552c289dcfe7b44918d475e4717d568764df4]
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don't say 'zoom in to see detail' if ... was committed by Robert Buels 02:22 PM
Commit [b6e9c26eb995e4e87f99be4913d79890ea0294d8]
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Revert "optimize BAM record parsing a... was committed by Robert Buels 02:22 PM
Commit [8790a6fc058f086cda574143a68a0847d5903770]
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slightly optimize BAM feature lookup ... was committed by Robert Buels 02:22 PM
Commit [4533d032bb4a2f46195235b98bf602f724f99d0c]
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start with 100bp initially when estim... was committed by Robert Buels 02:22 PM
Commit [b47934338be2791116ec1e4abf8d761c3b99398a]
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bugfix to how BAM feature end coords ... was committed by Robert Buels 02:22 PM
Commit [15c181d0c3cfc7c745e95627478276066d9ccae8]
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dial maxpxperbp back down to 20 https... was committed by Robert Buels 01:42 PM
Commit [dca9c98e84bedc397d8fae7db0809fdf63805532]
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optimize BAM record parsing a bit htt... was committed by Robert Buels 01:42 PM
Commit [5bc74779c5d1acb1be5cfd4a2c94ae60482070cd]
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stop making subfeatures and Gap attrs... was committed by Robert Buels 01:42 PM
Commit [5b5c23743283c1ded8ac8789ffcc2d714ef22d90]
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don't parse things from BAM records t... was committed by Robert Buels 01:42 PM
Commit [b64c7dd4f3d7e15706f010de8254d8fc86517b4d]
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fix bam cigar being decoded twice htt... was committed by Robert Buels 01:42 PM
Commit [31b6bdd06843b80d538f637402bc09efca954db9]
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make LRU caches call the callback in ... was committed by Robert Buels 11:29 AM
Commit [5ee15f4bafce2b04214f39086086dc448857ff2a]
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move BAM record parsing into the BAMF... was committed by Robert Buels 10:48 AM
Commit [768522517c714121e86c201a89e32520f31173ab]
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refactor bam parsing to separate out ... was committed by Robert Buels 10:48 AM
Commit [c93d36d9a6f3e6a4e8857bc4b0e1db948a64723b]
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remove unnecessary import of dojo dec... was committed by Robert Buels 09:20 AM
Commit [d2655a22c4d17aa77fdb537c5337ddc639a14fa1]
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cherry-picking GreggHelt2/dalliance@9... was committed by Robert Buels
Monday Oct 22

Commit [68ba503d5fff14a74acd94ed8558c7a465da5afe]
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fix subtle bug with track rendering e... was committed by Robert Buels 08:37 PM
Commit [e65921639df4d71ebdbcc8894c918437a04c6b14]
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give the gridlines track a name to ai... was committed by Robert Buels 07:27 PM
Commit [fe7acbdcb390319ae1b596423aec2234a19b21a9]
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polish RemoteBinaryFile a little more... was committed by Robert Buels 07:27 PM
Commit [ff603664f74f8859cfb0414d6a26711cd54e0bee]
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make mismatches visible on lower zoom... was committed by Robert Buels 07:27 PM
Commit [5359e9ee5981bbab3007ce6255b180da010d08ac]
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some more performance optimizations h... was committed by Robert Buels 07:27 PM
Commit [ccd1122420a36e19176aed9e5cc1bced38749b78]
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bump up the max px per bp to 50 https... was committed by Robert Buels 07:27 PM
Commit [4dcc3d526579ce6b7cdb85fd2137ab7c4da4718a]
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make HTML feature labels take the wid... was committed by Robert Buels 07:27 PM
Commit [f615520d304d299b8ecb53be42dbf55a7384ba45]
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speed up BAM and FeatureCoverage code... was committed by Robert Buels 07:27 PM
Commit [97f211540c95e364fd53a6f3e05f6999ca7ea5ec]
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remedy my enbugging of unbgzf https:/... was committed by Robert Buels 04:52 PM
Commit [ffeb09662b8d434077cfa5e4e05ab3fbfd19ad9e]
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get rid of sequence_blur business and... was committed by Robert Buels 04:32 PM
Commit [34541c07faeddb6711ae5e18cd5ba030da5cd1e2]
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tweak sequence track styles and color... was committed by Robert Buels 04:32 PM
Commit [9b604616a168aad612fc1d4f071ff58dfe7a27a2]
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align fetch ranges with minChunkSize ... was committed by Robert Buels 04:27 PM
Commit [43d4a58211c5a9835c48ec7252687f2d7f2755af]
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change binary cache minimum chunk siz... was committed by Robert Buels 04:27 PM
Commit [9815f4fc299746ca1129b2d236ba26df78151860]
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make BAM backend able to load BAM fil... was committed by Robert Buels 03:17 PM
Commit [02452581f53144c60224c02dcba7825b06fb33f5]
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from the OCD department: make "cannot... was committed by Robert Buels 03:17 PM
Commit [4d34c760a94939cef07be4547197af49c00350fb]
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bump the default size of the RemoteBi... was committed by Robert Buels 03:17 PM
Commit [d57906d0c69796af1d91a73093b45aaa71d3ce08]
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some in-passing code cleanups https:/... was committed by Robert Buels 03:17 PM
Commit [1424fb80d88713e2155c52e25ae5f0a3d2fb97fb]
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add an optimization for the common ca... was committed by Robert Buels
Saturday Oct 20

Commit [72f2c162794369d8905bc0a63e9bcade5171a4e8]
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rewrite golden-path optimization code... was committed by Robert Buels 12:19 PM
Commit [803c6023ab81af48d519335c4a108cb14b08fc30]
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