Overview - JBrowse - jbrowse

don't assign to a global variable whe... was committed by Robert Buels
Wednesday Oct 17

Commit [23aac5b942c3fef304f686d4f068e1887c4d7fd2]
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Renamed stuff https://github.com/GMOD... was committed by Erik Derohanian 12:28 PM
Commit [dc9551d56722e0e0e660a30920fe76d7c64cccb0]
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needs args.config to be added https:/... was committed by Erik Derohanian 12:28 PM
Commit [cf29bcd946187a1b6326065192a3310ce8220bfe]
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show deletions correctly when zoomed ... was committed by Robert Buels 08:46 AM
Commit [fa3a57894b39b1ca19e23b25ff9420fc9d2376f9]
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bugfix to alignment track deletion di... was committed by Robert Buels 08:46 AM
Commit [269286035392cb48aa89598483d58e8cde8f59af]
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colorize bases in the sequence track,... was committed by Robert Buels 07:57 AM
Commit [9d72cdd8bb6c2c581632ec56458fd2067c142365]
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improve alignment track sequence qual... was committed by Robert Buels 07:57 AM
Commit [f13c3de2c36b38bcf488c5d9a871812f70b007a8]
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tweak alignment default colors https:... was committed by Robert Buels
Tuesday Oct 16

Commit [20ae36ff83b5c3848b22a6afb9ac786f4dec5815]
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add a display of sequence quality sco... was committed by Robert Buels 03:29 PM
Commit [7b593fd3f48a11191a0f3efdbac98247eff63479]
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improve styles of default track metad... was committed by Robert Buels 03:29 PM
Commit [344acf070c88067537fdb69acf33bc1b5743fa28]
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add an Alignments track type, which c... was committed by Robert Buels 01:12 PM
Commit [a5933388b750eeb92e4a483892031282d6795ea7]
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Now loads functions properly referen... was committed by Erik Derohanian 12:37 PM
Commit [149b3625a079c0247616e06c32c40a8c4d96feb7]
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Works, I think? https://github.com/GM... was committed by Erik Derohanian 12:37 PM
Commit [aa17ecbb09c0d855433769a3c7751ad3bcd6b5c9]
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make it possible to style the individ... was committed by Robert Buels 09:51 AM
Commit [7696c2da3d57940306ffbe838f72b54b8a15e991]
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unnecessary code https://github.com/G... was committed by Robert Buels 09:51 AM
Commit [fc02fc66ead913339dd01070feddf87d053a3284]
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release 1.6.4 https://github.com/GMOD... was committed by Robert Buels 09:00 AM
Commit [f6a0698517aca22c8bc76bb5bd2836c28258bf7a]
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tweak release notes wording https://g... was committed by Robert Buels 09:00 AM
Commit [e4fb8bbd8297ecf2f962e86d7af70ba2887e167d]
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improve LazyPatricia partitioning cri... was committed by Robert Buels 08:26 AM
Commit [d7180a5734bc6eacacbce6bcc4081906f8c74291]
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update release notes for lazypatricia... was committed by Robert Buels 08:26 AM
Commit [d8e1cace2eecf8e1cab742d9a56e4cc6e6716bf8]
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switched API for ConfigAdaptor/gbrows... was committed by Erik Derohanian
Monday Oct 15

Commit [78937f71a8c036edb79774442bbd74e69f37d5cf]
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multiline subsection test https://git... was committed by Erik Derohanian 11:16 AM
Commit [6bf7183cb6fe5a19682af140e207c0d5a66fe95c]
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don't rename segment to seq_id in BAM... was committed by Robert Buels
Friday Oct 12

Commit [c9e54ec627e7e5bafb024a382c4906ec45653ded]
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remove the Strand field in the defaul... was committed by Robert Buels 01:41 PM
Commit [21de408519e1189078b6b1abe6c3345b901cd84b]
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in gff3 export, add a leading undersc... was committed by Robert Buels 01:41 PM
Commit [5a8304444c00ade96a8538bb03ac8618afef64aa]
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parse BAM CIGAR strings into GFF3-com... was committed by Robert Buels 01:41 PM
Commit [bb02300e6b4cb6a7ed728ba695d004e86d3e4a46]
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bugfix to by enbugging of default fea... was committed by Robert Buels 01:41 PM
Commit [74a6b27dc3166d6b2334f55c57a28588ac08cb9b]
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make feature default detail dialog mo... was committed by Robert Buels 01:41 PM
Commit [07a70982ff366478cc4f111775b9f9ed451654de]
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further tweak the field names of BAM ... was committed by Robert Buels 12:42 PM
Commit [c086d0c2b23cd35992e1a96c07e44a2d8e8c4c8f]
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fix BAM quality value parsing https:/... was committed by Robert Buels 12:42 PM
Commit [01af0342f647e48df8de80dc0b6ea8eec96967d4]
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try to deal more correctly with unmap... was committed by Robert Buels 12:42 PM
Commit [a15943f2a2876b5c359a5f73da3780db0dec085d]
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add complete decoding of BAM multi-se... was committed by Robert Buels 11:38 AM
Commit [b11cda16d7b5086221ad7de7aed3c5cfc3f4f43e]
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rename the `revcom` BAM record field ... was committed by Robert Buels 11:30 AM
Commit [4d6dc7d62022d92d91a9a01f09983965acb9a975]
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fix BAM backend reverse-complemented ... was committed by Robert Buels 11:30 AM
Commit [f3dec4494d2cae82eeff3715eed535e28d0ac95c]
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fix GFF3 output of boolean feature at... was committed by Robert Buels 11:30 AM
Commit [5894bd5da887067f4a7c0140513ba2f6b3b82497]
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make default feature detail dialog ab... was committed by Robert Buels 11:30 AM
Commit [6e11a2e8670e3d37a0a1e80f3269071c2ce49b5e]
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make the BAM backend also decode the ... was committed by Robert Buels 11:30 AM
Commit [d850916390976acd32eae4460a2692ce36853cab]
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stop trying to cache tagnames for BAM... was committed by Robert Buels 11:30 AM
Commit [91a80f47118cde698a9b22ac62c27d75c1f99110]
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don't add sam_ to the beginnings of t... was committed by Robert Buels 11:30 AM
Commit [f44f9ecbd923679cdae5591c06cc0a4888a3daa3]
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in HTML feature tracks, get rid of th... was committed by Robert Buels 08:15 AM
Commit [37d6f6b182df2ae2d136a308b1e3cb1b57e1e592]
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make XHRBlob cache global, providing ... was committed by Robert Buels
Thursday Oct 11

Commit [698560bdf8aefff6cb7e6dd4ec3cf96c1967b508]
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make HTMLFeatures tracks act sensibly... was committed by Robert Buels 12:11 PM
Commit [cb97889fc1b4bb0fdb2b6f6bb35e6c1acde68d00]
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increase the size of hte BAM cache to... was committed by Robert Buels 12:11 PM
Commit [8c851c574b385273475316533b6c6ce3d8c402c2]
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more LRUCache bugfixes. getting clos... was committed by Robert Buels 11:21 AM
Commit [5c050ece80aa6f134fda975a3fd3ecb6c4d8dc92]
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further improve LRUCache logging http... was committed by Robert Buels 10:00 AM
Commit [1dd21fb815252d4604fe8bd3539caf35a1369164]
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add caching of BAM records https://gi... was committed by Robert Buels 09:46 AM
Commit [8e3e4340c73ad33283854e4558c059c9efa7b37a]
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refactor BAM/File.js in preparation f... was committed by Robert Buels 09:46 AM
Commit [8001a93f11e0e35b0bcc18186917ab4902cee746]
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refinements to LRUCache logging, can ... was committed by Robert Buels 09:46 AM
Commit [252bb06ff5ec4444a747b762f3d74ba26015bd8d]
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Comments, whitespace, small changes h... was committed by Erik Derohanian 09:05 AM
Commit [a4aaecfeb153665b820ead643c60422422190d22]
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Added support for [section/subsection... was committed by Erik Derohanian 08:23 AM
Commit [d667f5d69bbd3aa0eb320a1b0847886a98aa9b80]
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add a "Press CTRL-C" message in the s... was committed by Robert Buels 08:15 AM
Commit [02eed8a433b9aefed6eacf3b9308d77dedae36eb]
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