Jbrowse JBrowse

Comments and changes to this ticket

• You flagged this item as spam.
  

  Victor Poten February 17th, 2011 @ 09:22 AM

  The problem is about Cross-site HTTP requests and dojo xhrGet method

• You flagged this item as spam.
  

  Victor Poten February 17th, 2011 @ 11:09 AM

  I found out the solution:

  First: you must configure apache to accept some headers, for instance:

  • Header set Access-Control-Allow-Origin "another.domain"
  • Header set Access-Control-Allow-Headers "x-requested-with"
  • Header set Access-Control-Allow-Methods "POST, GET, OPTIONS"

  Make sure that headers.load module is enabled.

  Second: jbrowse.js code must be fixed: At line 2067:

  LazyArray.prototype.range=function(_4,_5,_6,_7,_8){
  _4=Math.max(0,_4);
  _5=Math.min(_5,this.length-1);
  var _9=Math.floor(_4/this.chunkSize);
  var _a=Math.floor(_5/this.chunkSize);
  if(_7===undefined){
  _7=function(){
  };
  }
  var _b=new Finisher(_7);
  for(var _c=_9;_c<=_a;_c++){
  if(this.chunks[_c]){
  this._processChunk(_4,_5,_c,_6,_8);
  }else{
  var _d={start:_4,end:_5,callback:_6,param:_8,finish:_b};
  _b.inc();
  if(this.toProcess[_c]){
  this.toProcess[_c].push(_d);
  }else{
  this.toProcess[_c]=[_d];
  var _e=this.urlTemplate.replace(/\{chunk\}/g,_c);
  var _f=this;
  dojo.xhrGet({url:_e,handleAs:"json",load:this._makeLoadFun(_c),error:function(){
  _b.dec();
  }});
  }
  }
  }
  _b.finish();
  };
  

  This line must be fixed:
  

  dojo.xhrGet({url:e,handleAs:"json",load:this.makeLoadFun(c),error:function(){
  b.dec();
  }});
  

  the _e url string is not prefixed with the dataRoot, which must be passed to LazyArray class
  (for instance, at construction time)

• You flagged this item as spam.
  

  Victor Poten February 17th, 2011 @ 11:23 AM

  I have noticed that the LazyArray.js class is fixed in 1.2 version, the bug comes from 1.1

• 

  JBrowse March 2nd, 2012 @ 11:34 AM

  • State changed from “new” to “resolved”

  (from [8d138074a8c5553ee8031ae25ad511e67b68d045]) Merge branch 'one_based_UI', fixes #74.

  All user-facing coordinates are now displayed as 1-based.
  https://github.com/GMOD/jbrowse/commit/8d138074a8c5553ee8031ae25ad5...