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Victor Poten

Victor Poten

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Victor Poten's latest activity

Tuesday, March 15 2011
77 Missed optimization gcc option in wig2png makefile was updated in JBrowse
  • Victor Poten
    Victor Poten commented at 11:37 AM

    please, discard this ticket
    tanks
Monday, March 14 2011
76 wig-to-json.pl generates blank tiles was updated in JBrowse
  • Victor Poten
    • Assigned user set to JBrowse
    by Victor Poten at 1:23 PM

    The problem could be the normalization of max/min values step. If the normalization is done for the whole wig file its probable that many values could be almost...
75 Error in JsonGenerator.pm: division by zero was updated in JBrowse
78 Error in flatfile-to-json with bed file was created in JBrowse
  • Victor Poten
    Victor Poten created the ticket at 1:19 PM

    When running flatfile-to-json with the attached bed file I get the following error:

    Can't store CODE items at lib/Storable.pm (autosplit into lib/auto/Storable/...
Tuesday, March 01 2011
75 Error in JsonGenerator.pm: division by zero was updated in JBrowse
  • Victor Poten
    Victor Poten commented at 8:21 AM

    The error occurs at this line:

        # approximate the number of bases per histogram bin at the zoom level where
    # FeatureTrack.js switches to histogram view...
Monday, February 28 2011
76 wig-to-json.pl generates blank tiles was updated in JBrowse
  • Victor Poten
    Victor Poten commented at 3:47 PM

    Not all images are blank. In some images appears tiny peaks but it still very different in comparison to
    another genome viewers (like IGV, for instance)
  • Victor Poten
    Victor Poten created the ticket at 3:09 PM

    Hi,

    I executed wig-to-json with the attached file (an similar files) and I got blank images in the folder of 'tiles'. This problem didn't appear in 1.1 version.

    ...
77 Missed optimization gcc option in wig2png makefile was created in JBrowse
  • Victor Poten
    Victor Poten created the ticket at 3:13 PM

    Hi,

    I noticed that the makefile for wig2png generation missed the -O2 gcc option for optimization.
    Compiling the code with this option could speed up the progra...
Wednesday, February 23 2011
75 Error in JsonGenerator.pm: division by zero was created in JBrowse
  • Victor Poten
    Victor Poten created the ticket at 8:48 AM

    Illegal division by zero at /home/victor/work_bio/scripts/jbrowse/bin/../lib/JsonGenerator.pm line 284.
Thursday, February 17 2011
74 Problem with dataRoot property in mixed environments (tomcat/apache) was updated in JBrowse
  • Victor Poten
    Victor Poten commented at 11:23 AM

    I have noticed that the LazyArray.js class is fixed in 1.2 version, the bug comes from 1.1