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Ian Holmes

Ian Holmes

Member of 1 project: JBrowse

Ian Holmes's latest activity

Friday, October 15 2010
64 jbrowse.org demo is down was updated in JBrowse
  • Ian Holmes
    • State changed from new to resolved
    by Ian Holmes at 3:58 PM

    now moved to EC2 - questions answered separately by email
Monday, October 11 2010
19 handle wiggle regions that span tile boundaries was updated in JBrowse
  • Ian Holmes
    • State changed from new to resolved
    • Assigned user changed from Mitch to Ian Holmes
    • Milestone order changed from 0 to 0
    by Ian Holmes at 4:37 PM
Sunday, October 03 2010
31 write an adaptor allowing Bio::Graphics to produce image tracks was updated in JBrowse
  • Ian Holmes
    • State changed from resolved to open
    • Assigned user changed from Mitch to Ian Holmes
    by Ian Holmes at 4:46 PM

    not totally resolved - ImageTrackRenderer allows custom tracks via a GD-like API, but does not quite smoothly plug into Bio::Graphics
Monday, September 27 2010
27 Documentation of ImageTrack JSON format was updated in JBrowse
  • Ian Holmes
    • Assigned user changed from Mitch to Ian Holmes
    by Ian Holmes at 10:55 AM

    Thanks for your comments Joshua & Alexie. It's been a long time coming, but I do intend to start documenting the JSON format very soon (e.g. this week). There i...
66 Documentation of FeatureTrack JSON format was created in JBrowse
Thursday, September 16 2010
63 configure script does not check libpng version was created in JBrowse
  • Ian Holmes
    Ian Holmes created the ticket at 4:52 PM

    If libpng version is <1.4.0, linking of wig2png fails with the error message "undefined reference to png_set_longjmp_fn'"

    This could be fixed by updating the au...
Saturday, March 20 2010
55 Rewrite the JsonGenerator findDepth and deepestPath functions to be iterative... was updated in JBrowse
  • Ian Holmes
    Ian Holmes commented at 1:09 PM

    no complaining about the gotos.
  • Ian Holmes
    • State changed from new to resolved
    by Ian Holmes at 1:09 PM
Wednesday, March 17 2010
53 script to remove tracks was created in JBrowse
  • Ian Holmes
    Ian Holmes created the ticket at 8:53 AM

    Need a short Perl script to remove a track from the JSON file.

    Suggested default behavior: remove the relevant clause from data/trackInfo.json, save it in a tem...
Thursday, September 10 2009
44 vertical ruler was updated in JBrowse
  • Ian Holmes
    Ian Holmes commented at 4:12 PM

    What about it being on only when you mouseover a the overview/navbar?

    Mouseover ruler = create div; mouse move & mouse exit = move/hide div ?